Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KGA69_RS21915 Genome accession   NZ_CP074437
Coordinates   4616221..4616844 (-) Length   207 a.a.
NCBI ID   WP_045395642.1    Uniprot ID   -
Organism   Klebsiella sp. A52     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4611221..4621844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGA69_RS21900 (KGA69_21905) helD 4611456..4613510 (-) 2055 WP_045395638.1 DNA helicase IV -
  KGA69_RS21905 (KGA69_21910) - 4613634..4614080 (+) 447 WP_045395640.1 YccF domain-containing protein -
  KGA69_RS21910 (KGA69_21915) yccS 4614098..4616233 (+) 2136 WP_047045644.1 YccS family putative transporter -
  KGA69_RS21915 (KGA69_21920) sxy/tfoX 4616221..4616844 (-) 624 WP_045395642.1 TfoX/Sxy family DNA transformation protein Regulator
  KGA69_RS21920 (KGA69_21925) sulA 4617295..4617804 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  KGA69_RS21925 (KGA69_21930) ompA 4618157..4619209 (+) 1053 WP_080473199.1 porin OmpA -
  KGA69_RS21930 (KGA69_21935) matP 4619303..4619755 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  KGA69_RS21935 (KGA69_21940) - 4619941..4621698 (+) 1758 WP_047077856.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23584.17 Da        Isoelectric Point: 9.5354

>NTDB_id=564913 KGA69_RS21915 WP_045395642.1 4616221..4616844(-) (sxy/tfoX) [Klebsiella sp. A52]
MKKLSKLRFLQFQECLSPLGKISSRPLFGGYSLAIDNTVFAMVAEGEIYLRVCEQSAEYRVEHHSPMLTMRKNGRPVALK
YYRIDEALWQDSKMLFHLSELSLHTARSEKQHQRDSGRLKDLPNISFHMELMLIHAGITDVKMLRTIGAEKSWLKLREHN
KGISINVLESLAGAIAGTHSAALPAQRRQELREWANTQGYGVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=564913 KGA69_RS21915 WP_045395642.1 4616221..4616844(-) (sxy/tfoX) [Klebsiella sp. A52]
ATGAAGAAACTATCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCTCCCTTAGGCAAAATCAGTAGCCGGCCTCT
ATTTGGCGGTTACAGTCTGGCGATAGACAATACCGTGTTTGCCATGGTGGCCGAAGGCGAAATCTATCTTAGAGTGTGTG
AGCAAAGCGCAGAATATCGGGTCGAGCATCATAGCCCAATGTTAACTATGCGCAAAAATGGTCGGCCGGTAGCGCTAAAA
TATTACCGTATAGATGAAGCATTATGGCAGGACAGTAAAATGCTGTTTCACCTCTCGGAGCTGTCTTTGCATACGGCGCG
TAGCGAAAAGCAGCATCAGCGTGATTCTGGCAGGCTAAAAGATTTGCCTAATATCAGTTTCCACATGGAATTGATGTTGA
TTCATGCCGGAATAACCGATGTGAAAATGCTGCGTACAATTGGTGCGGAAAAAAGCTGGTTAAAATTGAGGGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCACCCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACGCAAGGGTACGGCGTGGAGGATTATTCTGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502