Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MF614_RS08930 Genome accession   NZ_CP092252
Coordinates   1845141..1846568 (-) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli strain ISHS7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840141..1851568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF614_RS08900 (MF614_08900) yeeZ 1840196..1841020 (+) 825 WP_136719778.1 SDR family oxidoreductase -
  MF614_RS08905 (MF614_08905) yeeY 1841066..1841995 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MF614_RS08910 (MF614_08910) yoeI 1842210..1842272 (+) 63 WP_010723108.1 membrane protein YoeI -
  MF614_RS08915 (MF614_08915) plaP 1842262..1843620 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MF614_RS08920 (MF614_08920) tsuA 1843799..1844857 (+) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  MF614_RS08925 (MF614_08925) tsuB 1844871..1845098 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MF614_RS08930 (MF614_08930) sbcB 1845141..1846568 (-) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  MF614_RS08935 (MF614_08935) dacD 1846757..1847923 (+) 1167 WP_069723112.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MF614_RS08940 (MF614_08940) sbmC 1848042..1848515 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MF614_RS08945 (MF614_08945) - 1848713..1849264 (+) 552 Protein_1756 FUSC family protein -
  MF614_RS08950 (MF614_08950) - 1849457..1850437 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  MF614_RS08955 (MF614_08955) - 1850532..1851050 (+) 519 Protein_1758 hypothetical protein -
  MF614_RS08960 (MF614_08960) tmaR 1851222..1851551 (+) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=564892 MF614_RS08930 WP_000980612.1 1845141..1846568(-) (sbcB) [Escherichia coli strain ISHS7]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=564892 MF614_RS08930 WP_000980612.1 1845141..1846568(-) (sbcB) [Escherichia coli strain ISHS7]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583