Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JOP69_RS11260 Genome accession   NZ_CP074436
Coordinates   2722667..2724028 (+) Length   453 a.a.
NCBI ID   WP_203392689.1    Uniprot ID   -
Organism   Polaribacter sp. Q13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2717667..2729028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOP69_RS11235 (JOP69_11235) - 2717853..2718662 (-) 810 WP_203392686.1 glycogen/starch synthase -
  JOP69_RS11240 (JOP69_11240) panC 2718760..2719608 (+) 849 WP_203392687.1 pantoate--beta-alanine ligase -
  JOP69_RS11245 (JOP69_11245) panD 2719637..2719987 (+) 351 WP_036825265.1 aspartate 1-decarboxylase -
  JOP69_RS11250 (JOP69_11250) - 2719984..2720934 (+) 951 WP_203392901.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  JOP69_RS11255 (JOP69_11255) - 2720990..2721904 (-) 915 WP_203392688.1 NAD(P)-dependent oxidoreductase -
  JOP69_RS11260 (JOP69_11260) radA 2722667..2724028 (+) 1362 WP_203392689.1 DNA repair protein RadA Machinery gene
  JOP69_RS11265 (JOP69_11265) - 2724115..2724675 (-) 561 WP_203392690.1 sugar O-acetyltransferase -
  JOP69_RS11270 (JOP69_11270) - 2724919..2725923 (-) 1005 WP_203392691.1 sugar kinase -
  JOP69_RS11275 (JOP69_11275) - 2726106..2726852 (-) 747 WP_203392692.1 uroporphyrinogen-III synthase -
  JOP69_RS18830 (JOP69_11280) - 2726871..2727539 (-) 669 WP_368377883.1 DUF4271 domain-containing protein -
  JOP69_RS11285 (JOP69_11285) - 2727595..2728317 (+) 723 WP_203392694.1 polyprenol monophosphomannose synthase -
  JOP69_RS11290 (JOP69_11290) - 2728325..2728786 (+) 462 WP_203392695.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49441.82 Da        Isoelectric Point: 7.3271

>NTDB_id=564886 JOP69_RS11260 WP_203392689.1 2722667..2724028(+) (radA) [Polaribacter sp. Q13]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEVIQKEEKRVWKQSTTAKQTINKPLKVADIQLNPEERIVTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNIKQKVLYVSGEESQSQIKMRAERLEANNSNCLILTETNTQNIFKNI
EETEPDVLVIDSIQTLHTTSIEASPGTISQIRETAAELIKYAKETATPVLLIGHINKDGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTSELGIYEMLSTGLREISNPSEILISKKDADLSGTAIASTLEGIRPLMIEVQALVSTAVYGTP
QRSTTGYNLKRLNMILAVLEKRAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDVAINPNVCFAAEVGLAGEI
RPVSKIDQRITEAEKLGYKTLVASKYNKISSKNHGIRLVLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=564886 JOP69_RS11260 WP_203392689.1 2722667..2724028(+) (radA) [Polaribacter sp. Q13]
ATGGCCAAAACCAAAACAACTTTTTTCTGTCAGAATTGCGGAACCCAACATGCAAAATGGGTAGGACAATGTGGTGCTTG
TAAAGAATGGAATACCATTGTAGAAGAAGTAATACAAAAAGAAGAAAAACGAGTTTGGAAACAATCTACAACTGCAAAAC
AAACCATAAACAAACCCTTAAAAGTTGCTGACATTCAGTTAAACCCAGAAGAAAGAATCGTTACCAATAATAACGAGTTA
GACACTGTATTAGGTGGCGGATTGGTAAAAGGTTCGGTAACACTTTTAGGTGGTGAACCAGGAATTGGAAAATCGACTTT
ATTATTGCAAGTTGCTTTAAATATCAAACAAAAAGTATTGTATGTTTCTGGTGAGGAAAGTCAGTCTCAGATAAAAATGA
GAGCAGAAAGACTAGAAGCTAACAACTCTAATTGCTTAATTCTTACAGAAACGAACACACAAAACATCTTCAAAAACATT
GAAGAAACAGAACCCGATGTTTTGGTTATAGATTCTATACAAACATTACACACAACTTCTATAGAAGCTTCTCCTGGTAC
AATTTCTCAAATTAGAGAAACTGCTGCCGAATTGATAAAATACGCTAAGGAAACTGCAACTCCGGTTTTATTAATTGGAC
ACATTAACAAAGACGGAAACATTGCTGGACCAAAAATTTTAGAACACATGGTAGATGTTGTTTTACAATTTGAAGGAGAC
AGAAATCATACCTATAGAATTTTAAGATCTCAAAAAAACAGATTTGGCTCTACCTCAGAATTAGGTATTTACGAAATGCT
TTCCACTGGATTAAGAGAAATATCTAATCCGTCTGAAATTTTAATTTCTAAAAAGGATGCAGATTTAAGCGGAACTGCAA
TTGCGTCTACCTTAGAAGGAATTAGACCTTTAATGATAGAAGTACAAGCGTTGGTTTCTACAGCTGTTTACGGAACACCT
CAGCGTTCTACAACCGGTTATAATTTAAAACGTTTAAACATGATTCTAGCAGTTCTAGAAAAAAGAGCTGGTTTTAAATT
AGGTGCAAAAGATGTCTTTTTAAATATTACCGGAGGCATAAATGTAGACGATCCTGCAATAGATTTAGCAGTTGTGGCTG
CCATTTTATCTTCTAACCAAGATGTTGCCATAAACCCAAATGTTTGTTTTGCTGCAGAAGTTGGTTTGGCAGGAGAAATA
AGACCGGTTTCTAAAATAGACCAAAGAATTACCGAAGCAGAAAAATTAGGATATAAAACGTTAGTAGCTTCTAAATACAA
TAAGATTTCTTCTAAAAACCACGGAATTCGTTTGGTTTTAGTTGGTAAGATTGAAGAAGCTTTTGCTACTTTGTTTGCGT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

47.702

100

0.481
  radA Streptococcus pneumoniae R6

47.702

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.702

100

0.481
  radA Streptococcus mitis NCTC 12261

47.702

100

0.481
  radA Streptococcus pneumoniae D39

47.702

100

0.481
  radA Streptococcus mitis SK321

47.484

100

0.479
  radA Bacillus subtilis subsp. subtilis str. 168

47.797

100

0.479