Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SITYG_RS01545 Genome accession   NZ_AP014880
Coordinates   292431..294785 (-) Length   784 a.a.
NCBI ID   WP_096362501.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 287431..299785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS01530 (SITYG_02840) pflB 287934..290249 (-) 2316 WP_003074645.1 formate C-acetyltransferase -
  SITYG_RS01535 (SITYG_02850) - 290478..291137 (+) 660 WP_096362499.1 hypothetical protein -
  SITYG_RS01540 (SITYG_02860) dinB 291156..292220 (+) 1065 WP_096362500.1 DNA polymerase IV -
  SITYG_RS01545 (SITYG_02870) recD/recD2/recDB 292431..294785 (-) 2355 WP_096362501.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SITYG_RS01550 (SITYG_02880) lepB 295011..295625 (-) 615 WP_020998280.1 signal peptidase I -
  SITYG_RS01555 (SITYG_02890) rnhC 295629..296519 (-) 891 WP_096362502.1 ribonuclease HIII -
  SITYG_RS01560 (SITYG_02900) - 296605..296910 (+) 306 WP_003074635.1 hypothetical protein -
  SITYG_RS01565 (SITYG_02910) - 296907..297455 (+) 549 WP_096362503.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88337.49 Da        Isoelectric Point: 4.6715

>NTDB_id=56486 SITYG_RS01545 WP_096362501.1 292431..294785(-) (recD/recD2/recDB) [Streptococcus intermedius strain TYG1620]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVADELAHLIEEDKVQHVDTKIFENSLFFAEEGICNNLLRILEKGNQNKYEPENIEAAL
AQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGTLPIDFIEKKADRSYFEVRSEQIPQMIERIVEVAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQDLINPVVKEQLIFEATDGQYRQGDRVIHLVNDAESNVFNGDLGYITDLLPAKYADSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVKN
TGTTRKTYLLQRFANLPTDEKIMHTSVDDLKTSVEDCVLTEENFSKINPMIGLTEEDIHSIFGN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=56486 SITYG_RS01545 WP_096362501.1 292431..294785(-) (recD/recD2/recDB) [Streptococcus intermedius strain TYG1620]
ATGGAATTTTACTTTTCAGGTACCATCGAACGCATTATTTTTGAAAATCCCAGCAGTTTTTTCCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGAGAAG
ACTATACCTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAGTACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACACACCATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGATCCAAATTCCGTTGCAGATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAACATGTCGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAAG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGGAAATCAAAATAAATATGAACCAGAAAACATCGAAGCTGCGCTT
GCTCAAATCGAAGAAAAATTTGCTATTTCTTACGATGCGATTCAGAAGCAAGCTATTTGCGATGCTATCCAGCATAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACCGTTATCAATGGAATTATTGCTGTCTACGCGCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCCGCTCCAACTGGGCGTGCTGCTAGACGCATGAATGAA
TTAACAGGACTGCCAAGTGCGACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACCAGTCATTTAGACGATTA
TTTGGACGCAGATTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTACTCAGCAATATCT
CTTCCAATAGCAAGCTACTCATTGTCGGAGATGCCGACCAGCTACCCTCTGTCAGTCCTGGACAAGTTTTAGCAGATTTG
CTGAAAATCCCCCTCCTTCCACAGACCAAATTAGAAAAAATTTATCGGCAGGGCGAAGATTCCACGATCGTTACCTTAGC
TAGTCAGATTCAAAAAGGCACTCTGCCAATTGATTTCATTGAAAAAAAAGCAGATCGTTCTTATTTTGAAGTTCGTAGCG
AGCAGATTCCACAGATGATTGAACGCATTGTGGAAGTCGCTATCCGTAGTGGTATTCCAGCTCAAGATGTACAAGTACTT
GCTCCTATGTACCGTGGACAAGCAGGAATTGACCACATCAATCAACTCATGCAAGATCTGATCAATCCTGTTGTAAAAGA
ACAACTCATCTTTGAAGCTACTGATGGTCAATACCGACAAGGTGATCGGGTTATTCATCTCGTCAACGATGCTGAAAGCA
ATGTGTTCAACGGTGATTTGGGTTATATCACCGATTTACTACCAGCAAAATATGCCGATTCCAAGCAAGATGAACTGACT
ATCAATTTCGACGGCAATGAAATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCCTATGCCATGAGCATCCA
CAAGTCTCAGGGTAGTGAATTTCCTGTCGTCATTTTACCAATTACCTCCAGCAGCCACCGTATGCTACAGCGCAATCTTA
TCTATACCGCCATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCTTTTGCCTTTGCTGTGAAAAAT
ACTGGCACCACCCGAAAAACCTATCTCCTTCAACGTTTTGCAAATCTACCAACAGATGAAAAAATAATGCACACTTCTGT
GGATGATTTGAAAACAAGCGTGGAAGACTGTGTCTTGACTGAAGAAAATTTTTCGAAAATAAATCCTATGATCGGACTGA
CTGAAGAAGATATCCACAGTATCTTTGGCAACTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(331-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42

95.663

0.402

Multiple sequence alignment