Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFD68_RS14190 Genome accession   NZ_CP074425
Coordinates   2877712..2878317 (-) Length   201 a.a.
NCBI ID   WP_066038538.1    Uniprot ID   A0A5V6CZ31
Organism   Salmonella sp. SJTUF15034     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2872712..2883317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFD68_RS14175 (KFD68_14175) helD 2872929..2874983 (-) 2055 WP_000420505.1 DNA helicase IV -
  KFD68_RS14180 (KFD68_14180) - 2875107..2875553 (+) 447 WP_001261222.1 YccF domain-containing protein -
  KFD68_RS14185 (KFD68_14185) yccS 2875572..2877725 (+) 2154 WP_000950876.1 YccS family putative transporter -
  KFD68_RS14190 (KFD68_14190) sxy/tfoX 2877712..2878317 (-) 606 WP_066038538.1 TfoX/Sxy family DNA transformation protein Regulator
  KFD68_RS14195 (KFD68_14195) sulA 2878534..2879043 (+) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  KFD68_RS14200 (KFD68_14200) ompA 2879400..2880452 (+) 1053 WP_001674965.1 porin OmpA -
  KFD68_RS14205 (KFD68_14205) matP 2880524..2880976 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  KFD68_RS14210 (KFD68_14210) - 2881162..2882922 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23208.96 Da        Isoelectric Point: 8.7403

>NTDB_id=564844 KFD68_RS14190 WP_066038538.1 2877712..2878317(-) (sxy/tfoX) [Salmonella sp. SJTUF15034]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PFLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=564844 KFD68_RS14190 WP_066038538.1 2877712..2878317(-) (sxy/tfoX) [Salmonella sp. SJTUF15034]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTTCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5V6CZ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746