Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AH5611_RS05720 Genome accession   NZ_CP092055
Coordinates   1190124..1190897 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA600     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185124..1195897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH5611_RS05700 (AH5611_001101) trmFO 1185467..1186774 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  AH5611_RS05705 (AH5611_001102) xerC 1187192..1188088 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  AH5611_RS05710 (AH5611_001103) hslV 1188085..1188630 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  AH5611_RS05715 (AH5611_001104) hslU 1188696..1190099 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  AH5611_RS05720 (AH5611_001105) codY 1190124..1190897 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AH5611_RS05725 - 1190948..1191040 (+) 93 WP_031785459.1 hypothetical protein -
  AH5611_RS05730 (AH5611_001106) rpsB 1191239..1192006 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  AH5611_RS05735 - 1192040..1192153 (+) 114 WP_001789890.1 hypothetical protein -
  AH5611_RS05740 (AH5611_001107) tsf 1192188..1193069 (+) 882 WP_069724269.1 translation elongation factor Ts -
  AH5611_RS05745 (AH5611_001108) pyrH 1193206..1193928 (+) 723 WP_000057330.1 UMP kinase -
  AH5611_RS05750 (AH5611_001109) frr 1193947..1194501 (+) 555 WP_001280003.1 ribosome recycling factor -
  AH5611_RS05755 (AH5611_001110) - 1194873..1195643 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=564803 AH5611_RS05720 WP_000055334.1 1190124..1190897(+) (codY) [Staphylococcus aureus strain USA600]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=564803 AH5611_RS05720 WP_000055334.1 1190124..1190897(+) (codY) [Staphylococcus aureus strain USA600]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428