Detailed information NTG0564787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J5O00_RS14120
• Genome accession: NZ_CP074415
• Coordinates: 2969322..2970311 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 64
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2964322..2975311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5O00_RS14105	recA	2964871..2965914 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
J5O00_RS14110	pncC	2966115..2966597 (-)	483	WP_025795578.1	nicotinamide-nucleotide amidase	-
J5O00_RS14115	mutS	2966682..2969243 (+)	2562	WP_029804975.1	DNA mismatch repair protein MutS	-
J5O00_RS14120	rpoS	2969322..2970311 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
J5O00_RS14125	-	2970402..2971325 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
J5O00_RS14130	-	2971340..2971966 (-)	627	WP_029804973.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J5O00_RS14135	surE	2971966..2972742 (-)	777	WP_029804971.1	5'/3'-nucleotidase SurE	-
J5O00_RS14140	truD	2972742..2973785 (-)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
J5O00_RS14145	ispF	2973832..2974308 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J5O00_RS14150	ispD	2974326..2975030 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=564787 J5O00_RS14120 WP_005478537.1 2969322..2970311(-) (rpoS) [Vibrio parahaemolyticus strain 64]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=564787 J5O00_RS14120 WP_005478537.1 2969322..2970311(-) (rpoS) [Vibrio parahaemolyticus strain 64]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851