Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J5O00_RS13995 Genome accession   NZ_CP074415
Coordinates   2947341..2947859 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 64     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2942341..2952859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS13970 rimM 2942450..2942998 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  J5O00_RS13975 rpsP 2943027..2943275 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  J5O00_RS13980 ffh 2943485..2944867 (-) 1383 WP_005462555.1 signal recognition particle protein -
  J5O00_RS13985 - 2945080..2945874 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  J5O00_RS13990 - 2946000..2947280 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  J5O00_RS13995 luxS 2947341..2947859 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  J5O00_RS14000 - 2947926..2948531 (-) 606 WP_015297256.1 hypothetical protein -
  J5O00_RS14005 gshA 2948556..2950124 (-) 1569 WP_029806072.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=564784 J5O00_RS13995 WP_005462534.1 2947341..2947859(-) (luxS) [Vibrio parahaemolyticus strain 64]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=564784 J5O00_RS13995 WP_005462534.1 2947341..2947859(-) (luxS) [Vibrio parahaemolyticus strain 64]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884