Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SITYG_RS00215 Genome accession   NZ_AP014880
Coordinates   31405..32178 (+) Length   257 a.a.
NCBI ID   WP_096362335.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26405..37178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS00195 (SITYG_00180) mreD 27183..27683 (+) 501 WP_003075140.1 rod shape-determining protein MreD -
  SITYG_RS00200 (SITYG_00190) pcsB 27793..28974 (+) 1182 WP_003077627.1 peptidoglycan hydrolase PcsB -
  SITYG_RS00205 (SITYG_00200) - 29108..30076 (+) 969 WP_048785444.1 ribose-phosphate diphosphokinase -
  SITYG_RS00210 (SITYG_00210) - 30240..31427 (+) 1188 WP_009567704.1 pyridoxal phosphate-dependent aminotransferase -
  SITYG_RS00215 (SITYG_00220) recO 31405..32178 (+) 774 WP_096362335.1 DNA repair protein RecO Machinery gene
  SITYG_RS00220 (SITYG_00230) plsX 32175..33173 (+) 999 WP_096362336.1 phosphate acyltransferase PlsX -
  SITYG_RS00225 (SITYG_00240) - 33170..33415 (+) 246 WP_003075134.1 acyl carrier protein -
  SITYG_RS00230 (SITYG_00250) purC 33560..34267 (+) 708 WP_096362337.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30043.45 Da        Isoelectric Point: 5.0359

>NTDB_id=56478 SITYG_RS00215 WP_096362335.1 31405..32178(+) (recO) [Streptococcus intermedius strain TYG1620]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEVTVFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFAFLQKMLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDEQRSHLEPNILYLLDQFQAVQFSELKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGEILKNKESE

Nucleotide


Download         Length: 774 bp        

>NTDB_id=56478 SITYG_RS00215 WP_096362335.1 31405..32178(+) (recO) [Streptococcus intermedius strain TYG1620]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTTTAG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAGGTTACCGTTTTCCAG
CATATCAACCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGATGCTAGTATTCAGGATAACGA
AATAGACTCTGCTCTCTTTGCTTTTTTGCAAAAAATGTTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCAACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAGTGAACTGAAAACAATTTCGTTAAATTCTG
AATTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATCTTAAAGAACAAGGAGTCGGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

72.941

99.222

0.724

Multiple sequence alignment