Detailed information NTG0564775

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: J5O00_RS07600
• Genome accession: NZ_CP074415
• Coordinates: 1586106..1587527 (-)
• Length: 473 a.a.
• NCBI ID: WP_025605651.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 64
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1581106..1592527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5O00_RS07575	-	1581671..1582321 (+)	651	WP_029804699.1	thiopurine S-methyltransferase	-
J5O00_RS07580	purT	1582423..1583598 (-)	1176	WP_029804700.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
J5O00_RS07585	cdd	1583746..1584633 (-)	888	WP_021822781.1	cytidine deaminase	-
J5O00_RS07590	-	1584997..1585674 (-)	678	WP_005454891.1	LrgB family protein	-
J5O00_RS07595	-	1585676..1586050 (-)	375	WP_005455074.1	CidA/LrgA family protein	-
J5O00_RS07600	sbcB	1586106..1587527 (-)	1422	WP_025605651.1	exodeoxyribonuclease I	Machinery gene
J5O00_RS07605	-	1587683..1589056 (-)	1374	WP_024701129.1	L-cystine transporter	-
J5O00_RS07610	-	1589249..1589944 (-)	696	WP_017448627.1	NAD(P)H-binding protein	-
J5O00_RS07615	cobT	1590629..1591672 (+)	1044	WP_029804701.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
J5O00_RS07620	-	1591717..1592469 (+)	753	WP_031822847.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54631.95 Da
• Isoelectric Point: 4.9813

>NTDB_id=564775 J5O00_RS07600 WP_025605651.1 1586106..1587527(-) (sbcB) [Vibrio parahaemolyticus strain 64]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=564775 J5O00_RS07600 WP_025605651.1 1586106..1587527(-) (sbcB) [Vibrio parahaemolyticus strain 64]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTGTCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.704	100	0.797