Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   MCU78_RS28565 Genome accession   NZ_CP092051
Coordinates   6465209..6465421 (-) Length   70 a.a.
NCBI ID   WP_185944544.1    Uniprot ID   -
Organism   Streptomyces sp. TYQ1024     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6460209..6470421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCU78_RS28540 (MCU78_28540) - 6460332..6460913 (+) 582 WP_221903328.1 hypothetical protein -
  MCU78_RS28545 (MCU78_28545) - 6460910..6462178 (+) 1269 WP_224347258.1 MFS transporter -
  MCU78_RS28550 (MCU78_28550) - 6462228..6463091 (+) 864 WP_185944541.1 DUF317 domain-containing protein -
  MCU78_RS28555 (MCU78_28555) - 6463203..6463988 (+) 786 WP_185944542.1 DUF317 domain-containing protein -
  MCU78_RS28560 (MCU78_28560) - 6464037..6465083 (+) 1047 WP_185944543.1 SpaA isopeptide-forming pilin-related protein -
  MCU78_RS28565 (MCU78_28565) dinR/lexA 6465209..6465421 (-) 213 WP_185944544.1 MarR family transcriptional regulator Regulator
  MCU78_RS28570 (MCU78_28570) - 6465820..6466026 (-) 207 WP_185944545.1 cold-shock protein -
  MCU78_RS28575 (MCU78_28575) - 6466228..6467046 (-) 819 WP_185944546.1 hypothetical protein -
  MCU78_RS28580 (MCU78_28580) - 6467377..6467730 (+) 354 WP_185944547.1 DUF317 domain-containing protein -
  MCU78_RS28585 (MCU78_28585) - 6467823..6468107 (+) 285 WP_185944579.1 hypothetical protein -
  MCU78_RS28590 (MCU78_28590) - 6468133..6468870 (+) 738 WP_185944580.1 DUF317 domain-containing protein -
  MCU78_RS28595 (MCU78_28595) - 6469672..6469980 (-) 309 WP_185944548.1 glutaredoxin -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 8026.22 Da        Isoelectric Point: 12.1035

>NTDB_id=564676 MCU78_RS28565 WP_185944544.1 6465209..6465421(-) (dinR/lexA) [Streptomyces sp. TYQ1024]
MTNVSQTQARVLRAVREHIAERGEAPTIRELCRRVGLSSTSSVAYHLVRLEEMGLISRRRSRHRSIRLDG

Nucleotide


Download         Length: 213 bp        

>NTDB_id=564676 MCU78_RS28565 WP_185944544.1 6465209..6465421(-) (dinR/lexA) [Streptomyces sp. TYQ1024]
GTGACGAACGTCTCTCAGACCCAGGCCCGTGTGCTGCGCGCCGTGCGCGAGCACATCGCCGAGCGGGGTGAGGCGCCAAC
GATCCGGGAGCTGTGTCGGCGGGTGGGCCTGTCGAGTACGTCGTCCGTGGCCTATCACCTGGTGCGGCTGGAGGAGATGG
GGTTGATTAGCCGGCGGCGATCCCGTCATCGCTCGATCCGTCTCGACGGTTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.706

97.143

0.386