Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MCU78_RS25300 Genome accession   NZ_CP092051
Coordinates   5764543..5766624 (-) Length   693 a.a.
NCBI ID   WP_185943728.1    Uniprot ID   -
Organism   Streptomyces sp. TYQ1024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5759543..5771624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCU78_RS25280 (MCU78_25280) pgl 5760028..5760810 (-) 783 WP_185943724.1 6-phosphogluconolactonase -
  MCU78_RS25285 (MCU78_25285) opcA 5760807..5761868 (-) 1062 WP_185943725.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  MCU78_RS25290 (MCU78_25290) zwf 5761865..5763388 (-) 1524 WP_185943726.1 glucose-6-phosphate dehydrogenase -
  MCU78_RS25295 (MCU78_25295) tal 5763390..5764505 (-) 1116 WP_185943727.1 transaldolase -
  MCU78_RS25300 (MCU78_25300) recP/tkt 5764543..5766624 (-) 2082 WP_185943728.1 transketolase Machinery gene
  MCU78_RS25305 (MCU78_25305) - 5767075..5768019 (+) 945 WP_224347208.1 heme o synthase -
  MCU78_RS25310 (MCU78_25310) - 5768124..5768489 (+) 366 WP_185943730.1 hypothetical protein -
  MCU78_RS25315 (MCU78_25315) - 5768574..5769560 (-) 987 WP_185943731.1 COX15/CtaA family protein -
  MCU78_RS25320 (MCU78_25320) - 5769678..5770457 (-) 780 WP_185943732.1 ABC transporter permease -
  MCU78_RS25325 (MCU78_25325) - 5770638..5771597 (-) 960 WP_185943733.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 75054.27 Da        Isoelectric Point: 5.1857

>NTDB_id=564670 MCU78_RS25300 WP_185943728.1 5764543..5766624(-) (recP/tkt) [Streptomyces sp. TYQ1024]
MSTKPTTTDLEWTELDRRAVDTARVLAMDSVQKVGNGHPGTAMSLAPAAYLLFQKLMRHDPSDADWTGRDRFVLSPGHTS
LTLYVQLFMAGYGLELSDLKAFRTWGSKTPGHPEHGHTRGVETTTGPLGQGIANAVGMAMAARYERGLFDPEAPKGESPF
DHTIWAIVSDGDLEEGISAEASSLAGHQKLGNIVALYDDNHISIEGDTATALSEDVLKRYEAYGWHVQRIEQAPNGDFDI
QALYAALKAAQEETERPSLIAARTIIAWPAPNAQNTEAAHGSALGDAEVAATKEVLGFDPKQTFQVDEDVFAHVRKVVDR
GREAHATWEKKLAKWREANPERAADFDRINAGELPDGWEKVLPVFPAGKSVATRKASGEVLKALGGVIPELWGGSADLAG
SNNTTIDATSSFLPEGNPLPEANPYGRTIHFGIREHAMGSTMNGIALHGNTRVYGGTFLVFSDYMRPAVRLAALMKLPVT
YVWTHDSIGLGEDGPTHQPVEHMAALRAIPGLNMVRPADANETAIAWREIMKRHATKPAPHGLALTRQNVPTYEANEGAA
KGGYVLFEAEGGRPQVILIATGSEVQMAVEARETLQAEGVPTRVVSMPSVEWFEEQDQAYRDGVLLPDVKARVAVEAGIG
LTWHRYVGEAGRIVSLEHFGASADYQVLFQEFGLTSEAVVEAARESLADAGRR

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=564670 MCU78_RS25300 WP_185943728.1 5764543..5766624(-) (recP/tkt) [Streptomyces sp. TYQ1024]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGAACTGGACCGGCGGGCCGTCGACACAGCCCGCGTCCTGGC
CATGGATTCCGTGCAGAAGGTCGGCAACGGCCATCCCGGTACGGCCATGAGCCTGGCCCCCGCCGCGTACCTGCTCTTCC
AGAAGCTGATGCGGCACGACCCCAGCGACGCCGACTGGACGGGCCGCGACCGTTTCGTCCTCTCGCCCGGTCACACCAGC
CTGACCCTCTACGTCCAGCTCTTCATGGCCGGCTACGGCCTGGAGCTGTCGGACCTCAAGGCCTTCCGCACCTGGGGCAG
CAAGACCCCGGGCCACCCTGAGCACGGCCACACCCGCGGCGTGGAGACCACGACCGGCCCGCTGGGCCAGGGCATCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCCGAGGCCCCGAAGGGCGAGTCGCCCTTC
GACCACACCATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCATCTCCGCGGAGGCGTCCTCGCTGGCCGGCCA
CCAGAAGCTCGGCAACATCGTCGCCCTGTACGACGACAACCACATCTCGATCGAGGGCGACACCGCGACGGCGCTGTCCG
AGGACGTCCTCAAGCGGTACGAGGCGTACGGCTGGCACGTCCAGCGCATCGAGCAGGCGCCCAACGGCGACTTCGACATC
CAGGCGCTGTACGCGGCGCTGAAGGCGGCGCAGGAGGAGACCGAGCGTCCCTCGCTGATCGCGGCCCGCACGATCATCGC
CTGGCCGGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGTGACGCCGAGGTGGCCGCGACCAAGG
AGGTGCTCGGCTTCGACCCGAAGCAGACCTTCCAGGTCGACGAGGACGTGTTCGCGCACGTCCGCAAGGTCGTCGACCGC
GGCCGCGAGGCCCACGCCACCTGGGAGAAGAAGCTCGCCAAGTGGCGCGAGGCCAACCCGGAGCGGGCGGCCGACTTCGA
CCGGATCAACGCGGGCGAGCTGCCCGACGGCTGGGAGAAGGTCCTCCCGGTCTTCCCGGCCGGCAAGTCCGTCGCGACCC
GCAAGGCGTCCGGCGAGGTCCTCAAGGCCCTCGGCGGCGTCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCCGGC
TCGAACAACACCACGATCGACGCGACCTCGTCGTTCCTCCCGGAGGGCAACCCGCTCCCCGAGGCGAACCCCTACGGCCG
CACGATCCACTTCGGCATCCGCGAGCACGCCATGGGCTCGACCATGAACGGCATCGCGCTGCACGGCAACACCCGCGTCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCCCCGCCGTCCGCCTCGCCGCGCTGATGAAGCTGCCGGTCACC
TACGTGTGGACGCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACGCACCAGCCGGTCGAGCACATGGCCGCGCTGCG
CGCCATCCCGGGCCTGAACATGGTCCGCCCGGCCGACGCCAACGAGACGGCCATCGCCTGGCGCGAGATCATGAAGCGCC
ACGCCACCAAGCCCGCCCCGCACGGTCTGGCCCTCACCCGCCAGAACGTCCCGACCTACGAGGCCAACGAGGGCGCGGCC
AAGGGCGGCTACGTGCTGTTCGAGGCCGAGGGCGGCCGGCCGCAGGTGATCCTGATCGCCACCGGCTCCGAGGTCCAGAT
GGCCGTCGAGGCGCGCGAGACGCTGCAGGCCGAGGGCGTCCCGACCCGCGTGGTCTCGATGCCGTCCGTCGAGTGGTTCG
AGGAGCAGGACCAGGCGTACCGCGACGGCGTCCTGCTGCCGGACGTCAAGGCCCGGGTGGCCGTCGAGGCGGGCATCGGC
CTGACCTGGCACCGCTACGTCGGCGAGGCCGGCCGGATCGTCTCGCTGGAGCACTTCGGCGCCTCCGCCGACTACCAGGT
GCTGTTCCAGGAGTTCGGCCTGACCTCGGAAGCCGTCGTCGAGGCCGCCCGCGAGTCGCTGGCCGACGCCGGCCGCCGCT
GA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-551)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(573-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.296

97.403

0.431