Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KHW16_RS21360 Genome accession   NZ_CP074407
Coordinates   4376680..4377309 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GDAR2-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4371680..4382309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW16_RS21345 (KHW16_21230) helD 4371922..4373976 (-) 2055 WP_001377983.1 DNA helicase IV -
  KHW16_RS21350 (KHW16_21235) yccF 4374099..4374545 (+) 447 WP_001261231.1 YccF domain-containing protein -
  KHW16_RS21355 (KHW16_21240) yccS 4374555..4376717 (+) 2163 WP_000875044.1 YccS family putative transporter -
  KHW16_RS21360 (KHW16_21245) sxy/tfoX 4376680..4377309 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KHW16_RS21365 (KHW16_21250) sulA 4377528..4378037 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KHW16_RS21370 (KHW16_21255) ompA 4378394..4379434 (+) 1041 WP_000750416.1 porin OmpA -
  KHW16_RS21375 (KHW16_21260) matP 4379510..4379962 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KHW16_RS21380 (KHW16_21265) ycbZ 4380148..4381908 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=564640 KHW16_RS21360 WP_000839153.1 4376680..4377309(-) (sxy/tfoX) [Escherichia coli strain GDAR2-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=564640 KHW16_RS21360 WP_000839153.1 4376680..4377309(-) (sxy/tfoX) [Escherichia coli strain GDAR2-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1