Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MCU78_RS11395 Genome accession   NZ_CP092051
Coordinates   2709836..2710888 (-) Length   350 a.a.
NCBI ID   WP_004941835.1    Uniprot ID   -
Organism   Streptomyces sp. TYQ1024     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2704836..2715888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCU78_RS11380 (MCU78_11380) - 2705803..2707125 (+) 1323 WP_224346999.1 lanthionine synthetase C family protein -
  MCU78_RS32945 - 2707396..2708604 (+) 1209 WP_185941773.1 cytochrome P450 -
  MCU78_RS11390 (MCU78_11390) - 2708671..2709843 (-) 1173 WP_185941774.1 dipeptide ABC transporter ATP-binding protein -
  MCU78_RS11395 (MCU78_11395) amiE 2709836..2710888 (-) 1053 WP_004941835.1 ABC transporter ATP-binding protein Regulator
  MCU78_RS11400 (MCU78_11400) - 2710900..2711790 (-) 891 WP_224347415.1 ABC transporter permease -
  MCU78_RS11405 (MCU78_11405) - 2711906..2712832 (-) 927 WP_152262286.1 ABC transporter permease -
  MCU78_RS11410 (MCU78_11410) - 2712926..2714554 (-) 1629 WP_185941776.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38087.18 Da        Isoelectric Point: 7.0595

>NTDB_id=564638 MCU78_RS11395 WP_004941835.1 2709836..2710888(-) (amiE) [Streptomyces sp. TYQ1024]
MTTIEKTADAPERKGPDAGPLLEVRDLHVEFHTRDGVAKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDMPPA
KIPKGEILFRGQDMLKMSAEERRKLRGAKIAMIFQDALSSLNPVLSVGYQLGEMFRIHQGLSKKDAKAKAIELMDRVRIP
AAKDRVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREFNMGLILITHDLGVVADVA
DKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLHIPAGCAFSPRCPKAQDICRTEI
PALHDVAEADGAALPGRRSACHFWKETIHG

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=564638 MCU78_RS11395 WP_004941835.1 2709836..2710888(-) (amiE) [Streptomyces sp. TYQ1024]
GTGACCACCATCGAGAAGACGGCGGACGCCCCCGAGCGGAAGGGCCCGGACGCCGGGCCGCTGCTGGAAGTCCGCGACCT
GCACGTCGAGTTCCACACCCGGGACGGCGTGGCCAAGGCCGTCAACGGCGTCAACTATTCGGTCAGCGCGGGCGAGACGC
TCGCCGTGCTGGGCGAGTCGGGCTCCGGCAAGTCCGTGACGGCGCAGGCCATCATGGGCATCCTCGACATGCCGCCGGCG
AAGATCCCCAAGGGGGAGATACTCTTCCGCGGCCAGGACATGCTGAAGATGTCCGCCGAGGAGCGCCGCAAGCTCCGGGG
CGCGAAGATCGCCATGATCTTCCAGGACGCGCTGTCCTCCCTGAACCCGGTGCTCTCCGTGGGCTACCAGCTCGGCGAGA
TGTTCCGCATCCACCAGGGGCTGTCGAAGAAGGACGCCAAGGCCAAGGCCATCGAGCTGATGGACCGCGTCCGGATCCCG
GCGGCCAAGGACCGGGTCGGGGACTACCCGCACCAGTTCTCGGGCGGCATGCGGCAGCGCATCATGATCGCGATGGCGCT
GGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCGACCACGGCCCTGGACGTCACCGTCCAGGCGCAGGTGATGGACC
TCCTGGCCGAACTCCAGCGGGAGTTCAACATGGGGCTCATCCTCATCACCCACGACCTCGGTGTCGTCGCCGACGTCGCC
GACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGACCGCGCCCGTCCACGAGCTCTACAAGCGCCCGGCCCACCC
GTACACCCGGGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCCTGCCGC
CCAACCTGCTGCACATCCCGGCGGGTTGCGCGTTCAGCCCGCGCTGCCCCAAGGCGCAGGACATCTGCCGTACGGAGATC
CCGGCGCTGCACGACGTGGCGGAGGCGGACGGCGCGGCGCTGCCGGGCCGGCGGAGCGCCTGCCACTTCTGGAAGGAGAC
GATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(42-200)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(252-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.014

84.571

0.431
  oppD Streptococcus mutans UA159

47.923

89.429

0.429
  amiE Streptococcus thermophilus LMG 18311

50.338

84.571

0.426
  amiE Streptococcus thermophilus LMD-9

50.338

84.571

0.426