Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KHA81_RS12270 Genome accession   NZ_CP074391
Coordinates   2539673..2540440 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2534673..2545440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS12250 - 2534875..2535687 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  KHA81_RS12255 ccpN 2535713..2536351 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  KHA81_RS12260 glyS 2536452..2538491 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  KHA81_RS12265 glyQ 2538484..2539371 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  KHA81_RS12270 recO 2539673..2540440 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  KHA81_RS12275 - 2540477..2540620 (-) 144 WP_007408286.1 YqzL family protein -
  KHA81_RS12280 era 2540776..2541681 (-) 906 WP_003152978.1 GTPase Era -
  KHA81_RS12285 - 2541662..2542072 (-) 411 WP_003152976.1 cytidine deaminase -
  KHA81_RS12290 - 2542196..2542570 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  KHA81_RS12295 ybeY 2542551..2543024 (-) 474 WP_015387991.1 rRNA maturation RNase YbeY -
  KHA81_RS12300 - 2543025..2545157 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=564566 KHA81_RS12270 WP_003152982.1 2539673..2540440(-) (recO) [Bacillus amyloliquefaciens strain L-17]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=564566 KHA81_RS12270 WP_003152982.1 2539673..2540440(-) (recO) [Bacillus amyloliquefaciens strain L-17]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894