Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MCS25_RS07875 Genome accession   NZ_CP092048
Coordinates   1833172..1835199 (-) Length   675 a.a.
NCBI ID   WP_005875401.1    Uniprot ID   Q7MU23
Organism   Porphyromonas gingivalis strain W50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828172..1840199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCS25_RS07860 (MCS25_07880) - 1829705..1831354 (-) 1650 WP_043876449.1 nucleoside kinase -
  MCS25_RS07865 (MCS25_07885) - 1831370..1832500 (-) 1131 WP_004584862.1 ISAs1-like element ISPg2 family transposase -
  MCS25_RS07870 (MCS25_07890) rpiB 1832648..1833085 (-) 438 WP_004584753.1 ribose 5-phosphate isomerase B -
  MCS25_RS07875 (MCS25_07895) recP/tkt 1833172..1835199 (-) 2028 WP_005875401.1 transketolase Machinery gene
  MCS25_RS07880 (MCS25_07900) - 1835643..1837463 (+) 1821 WP_005875390.1 alpha-L-fucosidase -
  MCS25_RS07885 (MCS25_07905) - 1837600..1838730 (+) 1131 WP_010956393.1 aminotransferase class V-fold PLP-dependent enzyme -
  MCS25_RS07890 (MCS25_07910) - 1838714..1838938 (+) 225 WP_005875396.1 DUF3343 domain-containing protein -
  MCS25_RS07895 (MCS25_07915) selD 1838935..1839981 (+) 1047 WP_004584748.1 selenide, water dikinase SelD -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 73795.96 Da        Isoelectric Point: 5.3284

>NTDB_id=564543 MCS25_RS07875 WP_005875401.1 1833172..1835199(-) (recP/tkt) [Porphyromonas gingivalis strain W50]
MNDKKLMNKAADNIRVLAAAMVEKAKSGHPGGAMGGADFVNVLFSEYLIFDPKNPQWAGRDRFFLDPGHMSPMLYAQLAL
TGKYSMDDLKAFRQWGSITPGHPEVDVMHGVENTSGPLGQGHTYAVGAAIAAKFLAHRFGWMMSQTIYAYISDGGIQEEV
SQGAGRIAGHLGLNNLIMFYDSNDVQLSTTVKEVASEDVAMKYRAWGWKVIEIAGNDADEIRKALTEAKGEGERPTLIIG
HTLMGKGAVGEDGSSYENMVSTHGQPLSAAGASFAETVKNLGGNPEEPFAIFPEVREMYAARLAELEQIMAERREEEQRW
RSTHPDLAAKFDAWFAGQTPQIDWKAIEQKPNQATRSASATVLGTLAGEVENMIVTSADLSNSDKTDGFLKKTHAMKKGD
FSGAFLQMGVSELTMACLCIGMALHGGVIPACGTFFVFSDYMKPAVRMAALMELPVKFIWTHDAFRVGEDGPTHEPVEQE
AQIRLMEKLHNHSGRRSMLVLRPADVQETTVAWKMAMENTHTPTALILSRQNITDLPANDSRYEEALQAEKGAYIVNTDQ
NIEVVLLASGSEVSTLVEGAELLRKRGVKLRIVSVPSEGLFRSQSAEYQEEVLPIGIRRFGLTAGLPVNLEGLVGESGAV
WGLNSFGFSAPYKVLDEKLGFTAENVYEQVLKILH

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=564543 MCS25_RS07875 WP_005875401.1 1833172..1835199(-) (recP/tkt) [Porphyromonas gingivalis strain W50]
ATGAATGACAAAAAGCTGATGAACAAGGCTGCGGACAATATTCGAGTATTGGCCGCTGCAATGGTGGAAAAAGCCAAAAG
CGGTCACCCGGGCGGAGCCATGGGCGGAGCGGACTTTGTAAACGTACTCTTCTCCGAGTATCTGATCTTTGACCCGAAGA
ACCCGCAATGGGCCGGTCGCGATCGCTTCTTCTTGGATCCGGGACATATGTCCCCGATGCTGTATGCTCAGCTGGCATTG
ACGGGCAAGTACTCCATGGATGACCTCAAAGCATTCCGCCAATGGGGCAGCATCACACCCGGACACCCCGAAGTAGATGT
CATGCACGGAGTGGAGAACACATCCGGCCCCTTGGGACAAGGCCACACCTATGCTGTCGGTGCAGCCATCGCAGCCAAAT
TCCTCGCTCATCGCTTCGGCTGGATGATGAGCCAAACGATCTATGCCTACATTTCCGATGGAGGAATACAGGAGGAAGTA
TCACAAGGAGCCGGCCGAATCGCCGGACACCTTGGGCTGAACAATCTGATTATGTTCTACGACTCGAACGACGTACAGCT
TTCTACGACAGTGAAAGAGGTGGCAAGCGAAGACGTAGCCATGAAATATCGTGCATGGGGTTGGAAGGTAATAGAGATTG
CAGGTAACGATGCGGATGAAATTCGCAAGGCCCTGACCGAAGCCAAGGGAGAGGGCGAGCGTCCCACACTTATCATCGGG
CACACCCTTATGGGCAAAGGTGCCGTAGGCGAGGATGGCAGTTCGTATGAGAATATGGTGAGCACGCATGGACAGCCGCT
ATCGGCTGCCGGAGCATCATTCGCCGAAACGGTCAAGAACCTCGGAGGCAATCCCGAAGAGCCGTTCGCCATCTTCCCCG
AAGTTCGGGAAATGTATGCCGCTCGCTTGGCAGAACTGGAGCAGATCATGGCAGAGCGTCGCGAAGAAGAGCAACGTTGG
CGCAGCACCCATCCTGATTTGGCAGCCAAGTTCGATGCGTGGTTTGCCGGTCAAACGCCCCAAATCGACTGGAAAGCTAT
AGAGCAGAAACCCAATCAGGCTACCCGCTCCGCTTCTGCCACCGTGTTGGGTACTCTTGCCGGAGAAGTGGAGAATATGA
TTGTAACCTCTGCCGACCTTTCCAATTCAGACAAGACCGATGGCTTCTTGAAGAAAACCCACGCCATGAAGAAAGGAGAT
TTCAGTGGAGCATTCCTGCAGATGGGTGTATCGGAGCTGACCATGGCCTGCCTCTGTATCGGTATGGCTCTTCATGGAGG
CGTCATTCCGGCTTGCGGTACCTTCTTCGTATTTTCCGACTACATGAAACCGGCCGTTCGTATGGCTGCCCTGATGGAAT
TGCCCGTCAAGTTTATCTGGACGCACGATGCTTTCCGTGTGGGCGAGGATGGTCCTACTCACGAACCGGTGGAACAGGAG
GCGCAAATTCGCCTGATGGAGAAGCTGCACAATCACAGCGGCCGTCGCTCCATGCTGGTCCTTCGTCCGGCCGATGTGCA
AGAGACTACCGTAGCTTGGAAGATGGCTATGGAGAATACGCATACTCCTACAGCTCTGATCCTTTCGCGTCAGAATATCA
CCGATCTGCCTGCTAACGACAGTCGGTACGAAGAAGCGTTGCAGGCTGAAAAGGGAGCTTATATCGTCAATACGGATCAG
AATATCGAAGTAGTTCTCCTGGCCAGCGGATCTGAGGTGTCCACATTGGTCGAGGGTGCAGAGCTGCTGCGCAAACGCGG
TGTAAAACTTCGTATCGTGTCGGTACCTTCCGAAGGACTTTTCCGTTCGCAGAGTGCCGAGTATCAGGAGGAAGTGCTTC
CCATCGGTATCAGGCGTTTCGGCCTGACAGCCGGATTGCCCGTCAACCTGGAAGGCCTTGTGGGTGAAAGCGGTGCCGTC
TGGGGATTGAACTCTTTCGGATTCTCCGCTCCCTATAAGGTGCTGGACGAGAAACTCGGCTTTACGGCAGAGAATGTGTA
CGAACAAGTGTTGAAAATACTCCACTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(8-340)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MU23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

38.54

100

0.391