Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MCS25_RS01740 Genome accession   NZ_CP092048
Coordinates   409241..411277 (+) Length   678 a.a.
NCBI ID   WP_005873818.1    Uniprot ID   Q7MX39
Organism   Porphyromonas gingivalis strain W50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 404241..416277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCS25_RS01715 (MCS25_01715) - 404844..405512 (+) 669 WP_005873790.1 hypothetical protein -
  MCS25_RS01720 (MCS25_01720) rplM 406073..406528 (+) 456 WP_005873830.1 50S ribosomal protein L13 -
  MCS25_RS01725 (MCS25_01725) rpsI 406538..406924 (+) 387 WP_004584903.1 30S ribosomal protein S9 -
  MCS25_RS01730 (MCS25_01730) rpsB 407059..407904 (+) 846 WP_004584904.1 30S ribosomal protein S2 -
  MCS25_RS01735 (MCS25_01735) tsf 408043..408867 (+) 825 WP_005873789.1 translation elongation factor Ts -
  MCS25_RS01740 (MCS25_01740) uvrB 409241..411277 (+) 2037 WP_005873818.1 excinuclease ABC subunit UvrB Machinery gene
  MCS25_RS01745 (MCS25_01745) - 411274..412794 (-) 1521 WP_005873833.1 potassium/proton antiporter -
  MCS25_RS10325 - 412943..413104 (-) 162 WP_144043226.1 DUF1661 domain-containing protein -
  MCS25_RS01750 (MCS25_01750) - 413330..414802 (+) 1473 WP_005873810.1 TIR domain-containing protein -
  MCS25_RS01755 (MCS25_01755) rseP 414905..416224 (+) 1320 WP_005873814.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 76490.81 Da        Isoelectric Point: 4.8085

>NTDB_id=564526 MCS25_RS01740 WP_005873818.1 409241..411277(+) (uvrB) [Porphyromonas gingivalis strain W50]
MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFP
ENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISL
HTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLS
ELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDAG
ERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADY
ELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSD
VDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITD
SMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALI
ASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=564526 MCS25_RS01740 WP_005873818.1 409241..411277(+) (uvrB) [Porphyromonas gingivalis strain W50]
ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGCATCAA
CGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACTTTTACGGTGGCTAACGTGGTGGCGGCGG
TCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCAGCACAGCTATACGGAGAGTTCAAAGCCTTCTTCCCC
GAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATAT
CGAAAAGGACATGGCCATCAACGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAG
ATGTGCTTGTGGTCAGCTCCGTATCCTGTCTCTACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTGATCAGCCTG
CACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTT
CGAGAGCGGCAACTTCCGTGTCAAAGGCGACAGCGTGGACATATTCCCCGCCGTAGAAGGTTATGACGGCGTGGCATACA
GGGTGGAGTTTTGGGATGGAGAGGTCGAGCGGCTGAGTACCTTCGATCCGCGAACGGGACGGGAATACGGCCTGCTGTCG
GAGCTGAAGATATATCCGGCCAATCTCTTCGTGACGACTAAGGAGCAGGTGGATCGGGCAGTAGGGAAAATCGATGTGGA
TCTGGGCGCACAGGTCGATTTTCTGAAAGAAATCGGCAAACCATATGAAGCCAAACGCTTGTATGAGCGGGTCACGTATG
ACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAGAACTATTCGCGCTACTTCGACGGCCGTGACGCGGGC
GAACGTCCTTTCTGTCTGTTGGATTATTTCCCGGAGGATTTCCTGTTGGTCATAGACGAAAGCCATGTAACGATACCGCA
GATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCG
ACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACGCCTGCCGACTAT
GAGCTGAACAGAAGCGAAGGCGTGATCGTCGAGCAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAA
GCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAAGAGCGCGTACTGGTAACGA
CCCTGACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTACGCCACGGTATCAGCACCGGCTACATACACAGCGAT
GTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGTCTACGATGCACTCATCGGGGTGAATCTGCT
CCGCGAAGGATTGGACTTGCCGGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATC
GTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGAC
AGTATGCAGCTCACCATGGACGAGACTGCACGCCGACGCGCAAAGCAACTGGCCTACAACGAAGCGCACGGCATCACCCC
CCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCGATACAGAATCCGGTG
CGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATT
GCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCACGACTTCGGGACGAAGCCGC
ACGATTGGAAAAGAAACTGGAGCAACTCACAGCCTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-671)

UvrB interaction domain (UvrB_inter)

(158-250)

Type III restriction enzyme, res subunit (ResIII)

(9-84)

Helicase conserved C-terminal domain (Helicase_C)

(438-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MX39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

53.927

97.64

0.527
  uvrB Streptococcus pneumoniae R6

53.776

97.64

0.525
  uvrB Streptococcus pneumoniae D39

53.776

97.64

0.525