Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KHA81_RS00530 Genome accession   NZ_CP074391
Coordinates   96485..96775 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 91485..101775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS00490 darA 91502..91831 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KHA81_RS00495 - 91844..92284 (+) 441 WP_004264730.1 DUF327 family protein -
  KHA81_RS00500 holB 92296..93285 (+) 990 WP_015388790.1 DNA polymerase III subunit delta' -
  KHA81_RS00505 ricT 93288..94115 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  KHA81_RS00510 yabA 94130..94489 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  KHA81_RS00515 - 94550..95293 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KHA81_RS00520 - 95280..95579 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  KHA81_RS00525 rsmI 95554..96435 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KHA81_RS00530 abrB 96485..96775 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KHA81_RS00535 metG 97258..99249 (+) 1992 WP_015388789.1 methionine--tRNA ligase -
  KHA81_RS00540 - 99325..100092 (+) 768 WP_004264700.1 TatD family hydrolase -
  KHA81_RS00545 - 100227..101552 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=564521 KHA81_RS00530 WP_169510469.1 96485..96775(-) (abrB) [Bacillus amyloliquefaciens strain L-17]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=564521 KHA81_RS00530 WP_169510469.1 96485..96775(-) (abrB) [Bacillus amyloliquefaciens strain L-17]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979