Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KG087_RS11150 Genome accession   NZ_CP074379
Coordinates   2362702..2364066 (-) Length   454 a.a.
NCBI ID   WP_213449869.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae strain FBL8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357702..2369066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG087_RS11130 (KG087_11130) - 2358616..2359392 (-) 777 WP_010492243.1 ABC transporter permease -
  KG087_RS11135 (KG087_11135) - 2359418..2360296 (-) 879 WP_075761258.1 ATP-binding cassette domain-containing protein -
  KG087_RS11140 (KG087_11140) - 2360572..2361462 (+) 891 WP_010492249.1 Rgg/GadR/MutR family transcriptional regulator -
  KG087_RS11145 (KG087_11145) - 2361566..2362681 (-) 1116 WP_010492251.1 PIN/TRAM domain-containing protein -
  KG087_RS11150 (KG087_11150) radA 2362702..2364066 (-) 1365 WP_213449869.1 DNA repair protein RadA Machinery gene
  KG087_RS11155 (KG087_11155) - 2364086..2364625 (-) 540 WP_010492255.1 dUTP diphosphatase -
  KG087_RS11160 (KG087_11160) - 2364990..2365280 (+) 291 WP_010492257.1 GNAT family N-acetyltransferase -
  KG087_RS11165 (KG087_11165) - 2365740..2367059 (+) 1320 WP_010492259.1 C1 family peptidase -
  KG087_RS11170 (KG087_11170) - 2367188..2368534 (+) 1347 WP_010492261.1 C1 family peptidase -
  KG087_RS11175 (KG087_11175) - 2368680..2368904 (-) 225 WP_010492262.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49093.59 Da        Isoelectric Point: 8.0456

>NTDB_id=564503 KG087_RS11150 WP_213449869.1 2362702..2364066(-) (radA) [Lacticaseibacillus zeae strain FBL8]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRAGSKVKPMRMDEVTVAKETRVKTGLAELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEGVI
DQMQPDYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEV
RRVNRIEDRVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAELLHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=564503 KG087_RS11150 WP_213449869.1 2362702..2364066(-) (radA) [Lacticaseibacillus zeae strain FBL8]
ATGGCGAAAGCAAAAACACAGTACGTATGTCAAAATTGCGGTTATATTTCGGCCACTTATTTAGGGCGTTGTCCAAATTG
TGGTGGCTGGAATACCTTAGTTGAAGAAACCGTCAGTTCAACCAAGTCGGCACCGCGGCAGACGCGGGCAGGCAGTAAAG
TCAAGCCGATGCGGATGGATGAAGTGACGGTTGCCAAGGAAACGCGGGTTAAGACCGGTTTGGCGGAATTAAACCGTGTG
CTTGGTGGTGGCGTGGTGCCGGGATCGCTGGTTTTGATTGGCGGGGATCCCGGAATCGGTAAATCGACCTTGCTATTGCA
GGTGTCCGGACAGTTGGCGAGCACTGGCGGTACCGTTTTATACGTGTCCGGCGAAGAAAGCGCCAGTCAGATCAAAATGC
GGGCCGGGCGCTTAGGAGTTGCCAATTCGGGGATGTACCTGTATCCGGAAACCGACATGCCTAGCATTGAAGGAGTCATT
GACCAGATGCAGCCGGATTATGTCGTGATTGACTCGGTTCAAACCATGAATGTACCGGATATGAACTCGGCAGTCGGTTC
GGTTGCCCAGATTCGCGAAGTCACGGCCGAACTGATGCGCATTGCCAAATCCAAAGGTGTAACCATCTTCATCGTCGGCC
ACGTCACCAAGGAAGGCGCGATTGCCGGGCCTAAAATTCTTGAACATATGGTCGACACCGTGCTTTATTTTGAAGGCGAT
ATGCACCACACTTACCGGATTTTACGGTCGGTTAAGAATCGGTTCGGCTCCACCAATGAAATCGGCATTTTTGAGATGCA
CCAAAACGGCCTGCAGGAAGTCGCTAATCCCTCGGAAATCTTCTTAGAGGAACGGCTGGCTGGGGCGACCGGTTCGGCGG
TGGTGGTGTCGATGGAAGGTACGCGGCCGATTTTGGTCGAAATTCAGGCATTGATCAGTCCCACGATGTACGGCAATGCC
AAACGCACTAGCAGCGGATTGGATCACAATCGTGTCAGCTTGATCATGGCAGTGCTGGAAAAACGGGCCAATCTCATGCT
GCAGAATCAGGACGCTTACCTGAAAGCCACTGGCGGCGTTAAGTTGGATGAGCCAGCGATTGACTTAGCGATGGCCGTTG
CGATTGCCTCGTCATATCGCGACAAAGAGATTCCGCCGACGGATTGTTTTGTCGGTGAAATCGGCTTAACCGGTGAAGTG
CGGCGGGTGAACCGCATTGAAGATCGGGTCAAAGAGGCGGCCAAGCTGGGTTTTAAGCGGATTTTCGTACCGCGCAACAA
TCTGCAAGGCTGGCACGCACCCAAAGATATTCAAGTCATTGGGGTTACAAGCATTGCCGAATTGTTGCATAAGGTTTTTA
ATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.433

99.78

0.683
  radA Streptococcus pneumoniae D39

68.433

99.78

0.683
  radA Streptococcus pneumoniae R6

68.433

99.78

0.683
  radA Streptococcus pneumoniae TIGR4

68.433

99.78

0.683
  radA Streptococcus mitis NCTC 12261

68.433

99.78

0.683
  radA Streptococcus mitis SK321

68.212

99.78

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

100

0.652