Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KG087_RS01235 Genome accession   NZ_CP074379
Coordinates   261594..263393 (-) Length   599 a.a.
NCBI ID   WP_010489766.1    Uniprot ID   A0A0R1EMI9
Organism   Lacticaseibacillus zeae strain FBL8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 256594..268393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG087_RS01210 (KG087_01210) - 257859..258203 (+) 345 WP_075761126.1 hypothetical protein -
  KG087_RS01215 (KG087_01215) - 258277..258996 (+) 720 WP_075761125.1 ATP-binding cassette domain-containing protein -
  KG087_RS01220 (KG087_01220) - 258993..259790 (+) 798 WP_010489770.1 metal ABC transporter permease -
  KG087_RS01225 (KG087_01225) - 259871..260719 (-) 849 Protein_245 metallophosphoesterase family protein -
  KG087_RS01230 (KG087_01230) - 260716..261597 (-) 882 WP_075761124.1 NAD(P)-dependent oxidoreductase -
  KG087_RS01235 (KG087_01235) pepF 261594..263393 (-) 1800 WP_010489766.1 oligoendopeptidase F Regulator
  KG087_RS01240 (KG087_01240) - 263522..264616 (+) 1095 WP_075761123.1 LCP family protein -
  KG087_RS01245 (KG087_01245) brnQ 264795..266174 (-) 1380 WP_010489762.1 branched-chain amino acid transport system II carrier protein -
  KG087_RS01250 (KG087_01250) - 266752..267435 (-) 684 WP_075761122.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67266.28 Da        Isoelectric Point: 5.5402

>NTDB_id=564484 KG087_RS01235 WP_010489766.1 261594..263393(-) (pepF) [Lacticaseibacillus zeae strain FBL8]
MQHLPVREDVPTKLTWDLTTIYPNDAAWTADFEAVREQAKEAAALKGTLGNSADALITGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPADKLTAWRDTESLKPFGHFIDAITVNRQHVLTTAAEALIAS
AGDALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKAHHYANARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVTLRKKVLGVNQLHMYDIYTPLTGKPPLTFTLDQA
KAEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHTDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSTYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=564484 KG087_RS01235 WP_010489766.1 261594..263393(-) (pepF) [Lacticaseibacillus zeae strain FBL8]
ATGCAACATTTACCGGTACGTGAAGATGTTCCAACCAAGCTGACGTGGGATCTAACCACCATTTATCCAAATGATGCGGC
CTGGACAGCCGACTTTGAAGCTGTGCGTGAACAGGCCAAAGAAGCAGCCGCGCTCAAAGGAACTTTAGGCAATTCAGCCG
ATGCACTCATCACCGGCATCAAGGCGGTTTTAGCAGTCTTTCGACGATTTGAGAAAGTCTATGTTTATTCAAGCCTGAAA
AGCGATCAGGATACTGGCAACGCCACTTATCAGGCGATGAATGCCAAGGCCGAGAGCCTCGGTGCCGAACTTGCCAGTCA
GTTAGCCTTTTTGGATCCGGAGATTCTGGCAATTCCCGCAGACAAACTGACAGCATGGCGCGACACCGAAAGCCTCAAGC
CGTTTGGGCATTTTATTGATGCGATCACCGTTAATCGCCAACATGTGCTGACAACCGCAGCCGAGGCTCTGATTGCCAGT
GCCGGTGATGCGCTGAACGCCAGCCATGCTACTTTCAACGTCCTAGATAATTCCGACCTGCAATTCGGTTTCGTCGAAAA
TGAAGACGGCGAAACGGTGCAACTCAGTAACGGCTTGTATGGCCAGTTGATTCGCTCAACTCAGCGAAAATTGCGCAAAG
AAGCCTTTGAAACGTTACTGCGTGCTTACGAAAGCATGAAGAACACGTTTGCCCAAACGCTGAGCGGTCAGGTCAAGGCG
CACAATTTCAATGCCAAGGCCCATCATTACGCCAATGCCCGCGCGGCGGCAATGGCAAGTAATCATATTCCGGAAAGTGT
TTATACGACCCTCATCGACCAGGTCAACACCCATCTGCCGCTTCTGCATCGCTATGTCACATTGCGGAAAAAAGTCCTGG
GCGTCAATCAATTGCACATGTATGACATCTACACCCCGTTGACCGGCAAGCCGCCATTGACCTTCACGCTTGACCAGGCC
AAAGCCGAGGCATTAAAGGCTTTGGCGCCGCTTGGTGATGATTATCTCAGCCATGTCCGGGAAATCTTTGACAACCGCTA
CATTGATGTCGTCGAAAATAAAGGCAAACGTTCCGGCGCTTATTCAGGTGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGACGAACTTTATACTTTGATTCACGAAACCGGCCACAGCGTTCACAGCTGGTACACGCGT
CACAACCAGCCTTATGTGTATGGCGATTACCCGATTTTTGTTGCCGAAATTGCTTCGACCACCAACGAAAATCTGCTCAC
CGATTACTTCCTGACCCACACGGATGACCCCAAGGTACGCGCCTACATCCTGAATTACTATCTCGATGGCTTTAAAGGTA
CCGTCTTCCGCCAGACGCAATTTGCCGAATTTGAACACTGGATTCATCAGCAGGACCAACAAGGCGAGCCACTCACGGCA
ACCAGTATGTCAACATACTACGCCGATCTCAATGCCCGGTATTATGGACCGGATGTTGCCCGCGATCCCGAAATTGCCTT
CGAATGGGCACGAATCCCGCATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGTTTTGCCGCAGCATCAACGC
TAGCTGCCGGCATTAGCAGTGGCGAACCCAACGCCGCGTCCCGCTACTTGGACTATTTAAAGTCAGGCAGCTCGCAATAT
GCCATCGATACCATGAAGACCGCCGGCGTCGATATGACCAAACCGGACTATCTGGAAGCGGCATTTTCAATGTTTGAAAA
ACGGTTAACCGAATTGGAAGAACTTTTACAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1EMI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.525

99.165

0.521