Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KG086_RS01050 Genome accession   NZ_CP074378
Coordinates   217886..219685 (-) Length   599 a.a.
NCBI ID   WP_129301967.1    Uniprot ID   A0A4Q1TUU4
Organism   Lacticaseibacillus chiayiensis strain FBL7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 212886..224685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG086_RS01020 (KG086_01020) - 213413..214027 (+) 615 Protein_204 capsular biosynthesis protein CpsH -
  KG086_RS01025 (KG086_01025) - 214151..214495 (+) 345 WP_129301963.1 hypothetical protein -
  KG086_RS01030 (KG086_01030) - 214569..215288 (+) 720 WP_213224212.1 metal ABC transporter ATP-binding protein -
  KG086_RS01035 (KG086_01035) - 215285..216082 (+) 798 WP_129301964.1 metal ABC transporter permease -
  KG086_RS01040 (KG086_01040) - 216163..217011 (-) 849 WP_129301965.1 metallophosphoesterase family protein -
  KG086_RS01045 (KG086_01045) - 217008..217889 (-) 882 WP_129301966.1 NAD(P)-dependent oxidoreductase -
  KG086_RS01050 (KG086_01050) pepF 217886..219685 (-) 1800 WP_129301967.1 oligoendopeptidase F Regulator
  KG086_RS01055 (KG086_01055) - 219814..220908 (+) 1095 WP_129301968.1 LCP family protein -
  KG086_RS01060 (KG086_01060) brnQ 221071..222450 (-) 1380 WP_213224213.1 branched-chain amino acid transport system II carrier protein -
  KG086_RS01065 (KG086_01065) - 223324..224007 (-) 684 WP_129301970.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67305.47 Da        Isoelectric Point: 5.4341

>NTDB_id=564457 KG086_RS01050 WP_129301967.1 217886..219685(-) (pepF) [Lacticaseibacillus chiayiensis strain FBL7]
MQHLPVREDVPTKLTWDLTTIYPNDAAWVADFEAVREQAKEAAMLKGTLGNSADALINGIKAVLSVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPADKLTAWRDTESLKPFGHFIDAITVNRQHVLTTAAEALIAS
AGDALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKVHHYATARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKILGVDQLHMYDIYTPLTGKPPLTFTLDQA
KVEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLAHTDDPKVRAYILNYYLDGFKGTVFRQAQFAEFEHWIHQQDQQGEPLTA
TSMATYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=564457 KG086_RS01050 WP_129301967.1 217886..219685(-) (pepF) [Lacticaseibacillus chiayiensis strain FBL7]
ATGCAACATTTACCGGTACGTGAAGATGTTCCAACCAAGCTGACGTGGGATCTAACCACCATTTATCCAAATGATGCAGC
CTGGGTAGCCGACTTTGAAGCTGTGCGTGAACAGGCCAAAGAGGCGGCCATGCTCAAGGGAACGTTAGGCAATTCAGCAG
ATGCGCTCATCAACGGTATTAAGGCGGTTTTATCAGTCTTCCGGCGATTTGAAAAAGTCTATGTTTATTCAAGCCTGAAA
AGCGATCAAGATACTGGCAATGCCACTTATCAGGCAATGAATGCCAAGGCCGAAAGCCTCGGCGCCGAGCTTGCTAGTCA
GTTAGCCTTTTTGGATCCAGAAATTTTGGCAATTCCGGCCGACAAGCTGACAGCATGGCGCGACACCGAAAGCCTCAAGC
CGTTTGGGCATTTTATTGATGCGATCACCGTCAATCGCCAACATGTGCTGACAACCGCAGCAGAGGCTCTGATTGCTAGT
GCCGGCGATGCGCTGAACGCCAGTCATGCCACTTTTAACGTCCTAGACAACTCCGACCTGCAATTCGGTTTTGTCGAAAA
TGAAGACGGCGAAACGGTACAACTCAGTAATGGCTTGTATGGCCAGTTGATTCGCTCAACCCAGCGAAAATTACGCAAAG
AAGCATTTGAAACGTTACTGCGCGCTTACGAAAGCATGAAGAACACGTTTGCCCAAACACTGAGCGGCCAGGTCAAGGCG
CACAACTTCAATGCCAAAGTCCATCATTACGCCACGGCCCGCGCGGCGGCAATGGCAAGCAACCACATTCCGGAAAGTGT
TTATACGACCCTCATTGACCAGGTCAACACCCATCTGCCGCTTCTGCATCGCTATGTTGCATTGCGGAAAAAAATCCTGG
GCGTCGATCAACTGCACATGTACGACATTTACACCCCGTTGACAGGTAAGCCACCATTGACGTTCACGCTCGACCAGGCT
AAAGTCGAAGCATTAAAGGCTTTGGCGCCGCTTGGTGATGATTATCTCAGCCATGTCCGGGAAATCTTTGACAACCGCTA
CATTGATGTTGTTGAAAACAAGGGCAAACGCTCAGGTGCTTATTCGGGTGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGACGAACTTTATACCTTGATACACGAAACCGGCCACAGCGTCCACAGCTGGTACACCCGC
CACAATCAGCCTTATGTATACGGTGATTACCCGATTTTTGTTGCCGAGATTGCATCGACTACCAACGAAAATCTGCTTAC
CGATTACTTCCTGGCCCACACAGATGATCCCAAGGTACGCGCCTACATCCTGAACTACTATCTCGATGGTTTTAAAGGCA
CCGTGTTCCGCCAAGCACAATTTGCCGAATTTGAGCACTGGATTCATCAGCAGGATCAACAAGGCGAACCGCTCACAGCA
ACTAGTATGGCAACATACTACGCCGATCTCAATGCCCGGTATTATGGACCGGATGTTGCTCGCGATCCCGAAATTGCCTT
CGAATGGGCACGAATCCCGCATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGATTTGCTGCAGCATCGACGC
TCGCAGCTGGTATTAGCAGTGGCGAGCCTAACGCCGCATCCCGCTACTTGGATTATTTAAAGTCAGGTAGTTCGCAATAT
GCCATTGATACCATGAAAACCGCTGGCGTTGATATGACCAAACCGGACTATCTGGAAGCCGCATTTTCGATGTTTGAGAA
GCGTTTAACGGAATTGGAAGAACTTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1TUU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.525

99.165

0.521