Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KG086_RS00050 Genome accession   NZ_CP074378
Coordinates   11583..12176 (+) Length   197 a.a.
NCBI ID   WP_129320465.1    Uniprot ID   -
Organism   Lacticaseibacillus chiayiensis strain FBL7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6583..17176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG086_RS13650 - 9333..9653 (+) 321 WP_238150155.1 hypothetical protein -
  KG086_RS00035 (KG086_00035) - 9719..10546 (+) 828 WP_238150156.1 MFS transporter -
  KG086_RS00040 (KG086_00040) ssb 10699..11130 (+) 432 WP_129301996.1 single-stranded DNA-binding protein -
  KG086_RS00045 (KG086_00045) rpsF 11257..11553 (+) 297 WP_129301995.1 30S ribosomal protein S6 -
  KG086_RS00050 (KG086_00050) ssb 11583..12176 (+) 594 WP_129320465.1 single-stranded DNA-binding protein Machinery gene
  KG086_RS00055 (KG086_00055) rpsR 12266..12502 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  KG086_RS00060 (KG086_00060) - 12588..13094 (-) 507 WP_129301993.1 type 1 glutamine amidotransferase domain-containing protein -
  KG086_RS00065 (KG086_00065) - 13456..14934 (+) 1479 WP_129301992.1 cytochrome ubiquinol oxidase subunit I -
  KG086_RS00070 (KG086_00070) cydB 14927..15946 (+) 1020 WP_129301991.1 cytochrome d ubiquinol oxidase subunit II -
  KG086_RS00075 (KG086_00075) - 16094..16288 (+) 195 WP_129301990.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21107.84 Da        Isoelectric Point: 4.9056

>NTDB_id=564455 KG086_RS00050 WP_129320465.1 11583..12176(+) (ssb) [Lacticaseibacillus chiayiensis strain FBL7]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQTPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNTANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=564455 KG086_RS00050 WP_129320465.1 11583..12176(+) (ssb) [Lacticaseibacillus chiayiensis strain FBL7]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTACGCTATACACAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGGCACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGTTGGAATCACGGGC
AACGACACAGCAGCGGCCGTCCGAACCTGCGAATCCGGCTGGCCAAGGCAACCAGAATTACGGCGGTGGGCAACAGTTTG
GAAATAACCAGCAGCCGCAAACGCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCGCCATCATCGAATCCGGGC
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAATGGCAATACTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492