Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KGS74_RS12760 Genome accession   NZ_CP074377
Coordinates   2708785..2710149 (+) Length   454 a.a.
NCBI ID   WP_049170035.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain FBL6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2703785..2715149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS74_RS12735 (KGS74_12735) - 2704058..2704282 (+) 225 WP_049170041.1 AbrB family transcriptional regulator -
  KGS74_RS12740 (KGS74_12740) - 2704430..2705776 (-) 1347 WP_049170039.1 C1 family peptidase -
  KGS74_RS12745 (KGS74_12745) - 2705907..2707226 (-) 1320 WP_049170038.1 C1 family peptidase -
  KGS74_RS12750 (KGS74_12750) - 2707669..2707959 (-) 291 WP_025013303.1 GNAT family N-acetyltransferase -
  KGS74_RS12755 (KGS74_12755) - 2708226..2708765 (+) 540 WP_049170036.1 hypothetical protein -
  KGS74_RS12760 (KGS74_12760) radA 2708785..2710149 (+) 1365 WP_049170035.1 DNA repair protein RadA Machinery gene
  KGS74_RS12765 (KGS74_12765) - 2710170..2711285 (+) 1116 WP_049170034.1 PIN/TRAM domain-containing protein -
  KGS74_RS12770 (KGS74_12770) - 2711390..2712286 (-) 897 WP_049170033.1 Rgg/GadR/MutR family transcriptional regulator -
  KGS74_RS12775 (KGS74_12775) - 2712567..2713445 (+) 879 WP_213291507.1 ATP-binding cassette domain-containing protein -
  KGS74_RS12780 (KGS74_12780) - 2713471..2714247 (+) 777 WP_049170056.1 ABC transporter permease -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49054.47 Da        Isoelectric Point: 8.0456

>NTDB_id=564450 KGS74_RS12760 WP_049170035.1 2708785..2710149(+) (radA) [Lacticaseibacillus casei strain FBL6]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRAGSKVKPMRMDEVTVAKETRVKTGLAELNRV
LGGGVVSGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEGVI
DQMQPDYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAGANGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEV
RRVNRIEDRVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=564450 KGS74_RS12760 WP_049170035.1 2708785..2710149(+) (radA) [Lacticaseibacillus casei strain FBL6]
ATGGCGAAAGCAAAAACACAGTACGTATGTCAAAATTGTGGTTATATTTCAGCCACTTATTTAGGGCGCTGTCCGAATTG
CGGCGGTTGGAATACGTTGGTTGAAGAAACCGTCAGTTCAACCAAGTCGGCACCGCGGCAGACGCGGGCAGGCAGTAAAG
TCAAGCCGATGCGGATGGATGAAGTGACGGTTGCCAAGGAAACGCGGGTTAAGACCGGTTTGGCGGAATTAAACCGTGTG
CTTGGTGGCGGCGTGGTGTCGGGATCGCTGGTTTTGATTGGCGGGGATCCCGGAATCGGTAAATCAACCTTGCTATTGCA
GGTGTCCGGACAGTTAGCGAGCACTGGCGGTACCGTTTTATACGTGTCCGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GTGCCGGGCGCTTAGGGGTTGCCAATTCGGGGATGTACCTGTATCCGGAAACCGACATGCCCAGCATTGAAGGTGTTATT
GACCAGATGCAGCCGGATTATGTCGTGATTGATTCGGTTCAAACCATGAATGTACCGGATATGAACTCGGCAGTCGGTTC
GGTTGCCCAGATTCGCGAAGTTACAGCCGAACTGATGCGTATTGCCAAATCTAAAGGGGTGACGATCTTCATCGTCGGCC
ACGTCACCAAGGAAGGCGCGATTGCCGGGCCTAAAATTCTTGAGCATATGGTCGACACCGTGCTTTATTTTGAAGGCGAT
ATGCACCACACTTACCGGATTTTACGGTCGGTTAAGAATCGGTTCGGCTCTACCAATGAAATCGGCATTTTTGAGATGCA
CCAAAATGGCCTGCAGGAAGTCGCCAATCCCTCGGAAATCTTCTTAGAGGAACGGCTGGCCGGGGCGAACGGTTCGGCGG
TGGTGGTATCGATGGAAGGCACGCGGCCGATTCTGGTGGAAATCCAGGCCCTGATCAGCCCCACAATGTACGGCAATGCC
AAACGTACTAGCAGCGGATTGGATCATAATCGCGTCAGCTTAATTATGGCGGTGCTGGAAAAGCGCGCCAATCTCATGCT
GCAGAATCAGGACGCTTACCTGAAAGCCACTGGCGGCGTTAAGTTGGATGAGCCGGCGATTGACTTAGCGATGGCGGTTG
CGATTGCCTCGTCATATCGCGATAAAGAGATTCCGCCGACTGATTGTTTTGTCGGTGAAATCGGCTTAACCGGTGAAGTG
CGGCGGGTGAACCGCATTGAAGATCGGGTCAAAGAGGCGGCCAAGCTGGGATTTAAGCGGATTTTCGTACCGCGTAACAA
CCTACAAGGCTGGCACGCACCCAAAGATATTCAAGTCATTGGGGTTACAAGCATTGCCGAAGCGTTGCATAAGGTTTTTA
ATTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.991

99.78

0.678
  radA Streptococcus pneumoniae D39

67.991

99.78

0.678
  radA Streptococcus pneumoniae R6

67.991

99.78

0.678
  radA Streptococcus pneumoniae TIGR4

67.991

99.78

0.678
  radA Streptococcus mitis NCTC 12261

67.991

99.78

0.678
  radA Streptococcus mitis SK321

67.77

99.78

0.676
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.654