Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MA850_RS08725 Genome accession   NZ_CP092034
Coordinates   1696124..1698022 (+) Length   632 a.a.
NCBI ID   WP_058000902.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1691124..1703022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS08695 (MA850_08695) - 1691789..1692061 (+) 273 WP_052782074.1 NifU family protein -
  MA850_RS08700 (MA850_08700) - 1692048..1692599 (+) 552 WP_002855727.1 hypothetical protein -
  MA850_RS08705 (MA850_08705) murE 1692583..1693866 (+) 1284 WP_058000904.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  MA850_RS08710 (MA850_08710) - 1693870..1694181 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  MA850_RS08715 (MA850_08715) - 1694178..1695272 (+) 1095 WP_058000903.1 PDZ domain-containing protein -
  MA850_RS08720 (MA850_08720) ispA 1695269..1696114 (+) 846 WP_002826398.1 polyprenyl synthetase family protein -
  MA850_RS08725 (MA850_08725) recP/tkt 1696124..1698022 (+) 1899 WP_058000902.1 transketolase Machinery gene
  MA850_RS08730 (MA850_08730) iamB 1698024..1699133 (+) 1110 WP_058000901.1 ABC transporter permease -
  MA850_RS08735 (MA850_08735) iamA 1699134..1699856 (+) 723 WP_052821967.1 ATP-binding cassette domain-containing protein -
  MA850_RS08740 (MA850_08740) - 1699859..1700749 (+) 891 WP_002860094.1 MlaD family protein -
  MA850_RS08745 (MA850_08745) - 1700749..1701348 (+) 600 WP_058000900.1 ABC-type transport auxiliary lipoprotein family protein -
  MA850_RS08750 (MA850_08750) - 1701404..1701904 (+) 501 WP_002892084.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69632.44 Da        Isoelectric Point: 6.3607

>NTDB_id=564443 MA850_RS08725 WP_058000902.1 1696124..1698022(+) (recP/tkt) [Campylobacter jejuni subsp. jejuni strain 15516C]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPIFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=564443 MA850_RS08725 WP_058000902.1 1696124..1698022(+) (recP/tkt) [Campylobacter jejuni subsp. jejuni strain 15516C]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCTGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCCA
CTTGGCTAAACCGTGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGCGGC
TATGACTTAAGCTTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCTGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTCATTTATGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGCGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGTAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGTTA
TTAAATCCTGATTTTAACAAAATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCAGACTTAGGCCCTTCGAATAAAACAGAACTTC
ACAGTATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACGCACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTGTGCTTTCACGCCAAAAACTCAAGGCTCTAAATGA
ACCTATTTTTGGAGATGTAAAAAACGGAGCGTATTTACTCAAAGAAAGCAAAGAGGCTAAATTTACACTTCTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTCTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCCATAAAGTATATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGACAAAGATG
TATTTGAACACTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, C-terminal domain (Transketolase_C)

(521-623)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.741

100

0.418