Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MA850_RS06625 Genome accession   NZ_CP092034
Coordinates   1271542..1272408 (-) Length   288 a.a.
NCBI ID   WP_052779688.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266542..1277408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS06600 (MA850_06600) gpsA 1266842..1267738 (-) 897 WP_079851614.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  MA850_RS06605 (MA850_06605) gatB 1267735..1269153 (-) 1419 WP_069176576.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  MA850_RS06610 (MA850_06610) - 1269271..1269456 (-) 186 WP_052779690.1 hypothetical protein -
  MA850_RS06615 (MA850_06615) atpB 1269453..1270133 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  MA850_RS06620 (MA850_06620) radA/sms 1270202..1271542 (-) 1341 WP_057035621.1 DNA repair protein RadA Machinery gene
  MA850_RS06625 (MA850_06625) pilA 1271542..1272408 (-) 867 WP_052779688.1 signal recognition particle-docking protein FtsY Machinery gene
  MA850_RS06630 (MA850_06630) - 1272408..1272965 (-) 558 WP_052793734.1 TlpA disulfide reductase family protein -
  MA850_RS06635 (MA850_06635) - 1273048..1273674 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  MA850_RS06640 (MA850_06640) rny 1273595..1275148 (+) 1554 WP_002867373.1 ribonuclease Y -
  MA850_RS06645 (MA850_06645) - 1275157..1275714 (+) 558 WP_032591438.1 DedA family protein -
  MA850_RS06650 (MA850_06650) - 1275714..1276973 (+) 1260 WP_238513146.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31976.96 Da        Isoelectric Point: 5.2821

>NTDB_id=564427 MA850_RS06625 WP_052779688.1 1271542..1272408(-) (pilA) [Campylobacter jejuni subsp. jejuni strain 15516C]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKIETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDALLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=564427 MA850_RS06625 WP_052779688.1 1271542..1272408(-) (pilA) [Campylobacter jejuni subsp. jejuni strain 15516C]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAATAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCGGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATCTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTACTTAGATGCTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.94

100

0.424