Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MA850_RS06005 Genome accession   NZ_CP092034
Coordinates   1149974..1150525 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15516C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1144974..1155525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA850_RS05970 (MA850_05970) - 1145165..1145590 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  MA850_RS05975 (MA850_05975) - 1145654..1146273 (+) 620 Protein_1161 NAD(P)H-dependent oxidoreductase -
  MA850_RS05980 (MA850_05980) - 1146273..1146878 (+) 606 WP_052790983.1 NAD(P)H-dependent oxidoreductase -
  MA850_RS05985 (MA850_05985) pgsA 1147003..1147539 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MA850_RS05990 (MA850_05990) rseP 1147536..1148642 (+) 1107 WP_238513134.1 RIP metalloprotease RseP -
  MA850_RS05995 (MA850_05995) - 1148635..1149501 (+) 867 WP_058000704.1 VirK family antimicrobial peptide resistance protein -
  MA850_RS06000 (MA850_06000) rpsF 1149588..1149965 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  MA850_RS06005 (MA850_06005) ssb 1149974..1150525 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  MA850_RS06010 (MA850_06010) rpsR 1150536..1150796 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MA850_RS06015 (MA850_06015) lon 1150856..1153231 (-) 2376 WP_052779714.1 endopeptidase La -
  MA850_RS06020 (MA850_06020) - 1153248..1153895 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  MA850_RS06025 (MA850_06025) fliW 1154056..1154445 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MA850_RS06030 (MA850_06030) proC 1154445..1155176 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  MA850_RS06035 (MA850_06035) ctsT 1155173..1155475 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=564419 MA850_RS06005 WP_002921394.1 1149974..1150525(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 15516C]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=564419 MA850_RS06005 WP_002921394.1 1149974..1150525(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 15516C]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393