Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   MA853_RS07685 Genome accession   NZ_CP092026
Coordinates   1487211..1487807 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain 14240-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482211..1492807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS07665 (MA853_07665) - 1482966..1483730 (+) 765 WP_002781156.1 TIGR02757 family protein -
  MA853_RS07670 (MA853_07670) - 1483733..1484497 (+) 765 WP_002784060.1 TSUP family transporter -
  MA853_RS07675 (MA853_07675) ctsF 1484494..1485669 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  MA853_RS07680 (MA853_07680) ctsE 1485656..1487218 (-) 1563 WP_238522833.1 GspE/PulE family protein Machinery gene
  MA853_RS07685 (MA853_07685) ctsX 1487211..1487807 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  MA853_RS07690 (MA853_07690) ctsP 1487804..1488400 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  MA853_RS07695 (MA853_07695) ctsD 1488393..1489811 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MA853_RS07700 (MA853_07700) ctsR 1489789..1490100 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=564393 MA853_RS07685 WP_002779313.1 1487211..1487807(-) (ctsX) [Campylobacter coli strain 14240-1]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=564393 MA853_RS07685 WP_002779313.1 1487211..1487807(-) (ctsX) [Campylobacter coli strain 14240-1]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434