Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MA853_RS05665 Genome accession   NZ_CP092026
Coordinates   1085994..1086542 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain 14240-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1080994..1091542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS05635 (MA853_05635) rseP 1081106..1082209 (+) 1104 WP_038835429.1 RIP metalloprotease RseP -
  MA853_RS05640 (MA853_05640) - 1082206..1083063 (+) 858 WP_038835427.1 VirK family antimicrobial peptide resistance protein -
  MA853_RS05645 (MA853_05645) - 1083056..1084057 (-) 1002 WP_238522818.1 sugar phosphate isomerase/epimerase -
  MA853_RS05650 (MA853_05650) - 1084057..1085328 (-) 1272 Protein_1090 MFS transporter -
  MA853_RS05660 (MA853_05660) rpsF 1085608..1085985 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  MA853_RS05665 (MA853_05665) ssb 1085994..1086542 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  MA853_RS05670 (MA853_05670) rpsR 1086553..1086813 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  MA853_RS05675 (MA853_05675) lon 1086869..1089244 (-) 2376 WP_002783351.1 endopeptidase La -
  MA853_RS05680 (MA853_05680) - 1089260..1089907 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  MA853_RS05685 (MA853_05685) fliW 1090071..1090460 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  MA853_RS05690 (MA853_05690) proC 1090460..1091197 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  MA853_RS05695 (MA853_05695) ctsT 1091194..1091499 (+) 306 WP_002783353.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=564372 MA853_RS05665 WP_002777084.1 1085994..1086542(+) (ssb) [Campylobacter coli strain 14240-1]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=564372 MA853_RS05665 WP_002777084.1 1085994..1086542(+) (ssb) [Campylobacter coli strain 14240-1]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379