Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KFZ58_RS10140 Genome accession   NZ_CP074373
Coordinates   1971672..1973399 (-) Length   575 a.a.
NCBI ID   WP_235791209.1    Uniprot ID   -
Organism   Virgibacillus sp. NKC19-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1966672..1978399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ58_RS10125 (KFZ58_10120) - 1967131..1968477 (+) 1347 WP_235791206.1 aspartate kinase -
  KFZ58_RS10130 (KFZ58_10125) spo0A 1969048..1969830 (-) 783 WP_235791207.1 sporulation transcription factor Spo0A -
  KFZ58_RS10135 (KFZ58_10130) spoIVB 1970109..1971398 (-) 1290 WP_370642259.1 SpoIVB peptidase -
  KFZ58_RS10140 (KFZ58_10135) recN 1971672..1973399 (-) 1728 WP_235791209.1 DNA repair protein RecN Machinery gene
  KFZ58_RS10145 (KFZ58_10140) ahrC 1973433..1973882 (-) 450 WP_235791210.1 transcriptional regulator AhrC/ArgR -
  KFZ58_RS10150 (KFZ58_10145) - 1973919..1974737 (-) 819 WP_235791211.1 TlyA family RNA methyltransferase -
  KFZ58_RS10155 (KFZ58_10150) - 1974739..1975347 (-) 609 WP_235791212.1 hypothetical protein -
  KFZ58_RS10160 (KFZ58_10155) - 1976039..1976926 (-) 888 WP_235791213.1 polyprenyl synthetase family protein -
  KFZ58_RS10165 (KFZ58_10160) - 1976929..1977168 (-) 240 WP_235791214.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65359.97 Da        Isoelectric Point: 5.0442

>NTDB_id=564371 KFZ58_RS10140 WP_235791209.1 1971672..1973399(-) (recN) [Virgibacillus sp. NKC19-16]
MLTELSIRDFAIIDEVSITFNDGLTVLSGETGAGKSIIIDAVQLLAGGRGSVEYVRHETKKAEIEGLFTIENKNHPIYQL
SKEYGIEIADAQIVLQRTITANGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMNPETHIELLDSYDPVSIAKAK
EEYADLFKKLSTLKYRYEKFNDNEQEMAHRLDLLQFQMKELEQANLVPDEDEALEEERLSLANFEKIHNALLDAYNALYG
EQKGLEWLSIAHQSLQDNTHYDNFIAEKSEEVSNSYFTLEELTYDLRNHIESLQYSPERLNEIESRLSEINRLKKKYGST
VNDILAYMAKIEEEIEEITNKDSHLTNLAEQINETAKDAYLEACQLHNIRRKAADSLMKAVHQELKGLYLEKASFSISFD
HKQHERLIQNNDYTSIDLHKNGFDHVRFLISTNTGEPLKSLNKVASGGELSRIMLVLKKIFAKHQGVTSVIFDEVDTGVS
GRVAQAIAEKIFQISSESQVLCITHLPQVAAMADVHKLIEKQEIENRTATLVWELTAEEKIEELSRMMTGTKLTETAKEH
GKELLDLASAFKNKK

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=564371 KFZ58_RS10140 WP_235791209.1 1971672..1973399(-) (recN) [Virgibacillus sp. NKC19-16]
ATGTTAACAGAATTATCCATTCGTGATTTTGCAATAATTGATGAAGTATCCATTACATTTAATGACGGGCTTACTGTTTT
ATCCGGAGAAACCGGTGCAGGTAAATCAATTATTATTGATGCAGTTCAATTATTGGCAGGTGGACGTGGATCTGTAGAGT
ATGTAAGGCATGAAACAAAAAAAGCAGAAATAGAAGGGCTATTCACCATTGAAAATAAGAATCATCCGATCTACCAGCTT
AGCAAGGAGTATGGAATAGAAATAGCGGATGCACAAATTGTCCTTCAACGAACAATAACAGCAAATGGAAAAAGTATATG
TAGAGTTAACAGCAAGTTGGTGACCTTGGCTATTCTTAGGGAATTTGGAAAGACACTGATTGATATTCATAGTCAGCATG
AAACACAATCCCTGATGAATCCGGAAACGCACATAGAATTACTTGACTCCTATGATCCTGTATCCATAGCAAAGGCAAAA
GAAGAATATGCGGATTTATTTAAAAAATTATCTACCCTGAAATATCGATATGAAAAATTTAATGACAATGAACAAGAGAT
GGCTCACCGATTGGACTTATTGCAATTCCAAATGAAGGAACTGGAACAGGCTAACCTAGTCCCGGATGAAGACGAAGCTC
TCGAGGAAGAAAGACTTTCCCTAGCTAATTTTGAAAAGATACATAATGCCCTTTTGGATGCGTACAATGCTTTATATGGT
GAACAAAAAGGGCTGGAATGGTTAAGTATCGCTCACCAGTCATTACAGGATAATACCCATTATGATAATTTCATTGCAGA
AAAATCGGAGGAAGTATCCAATAGTTATTTTACCCTTGAGGAATTAACTTATGATCTGCGCAATCATATTGAAAGTCTGC
AATATAGTCCGGAACGCTTAAATGAAATCGAATCACGCCTAAGTGAAATAAACAGATTAAAGAAAAAGTATGGATCAACT
GTAAACGATATACTCGCATATATGGCAAAAATCGAAGAGGAAATTGAGGAAATAACAAATAAGGATTCTCATCTTACAAA
TCTCGCTGAACAGATTAATGAAACGGCTAAAGATGCTTACCTGGAGGCATGTCAACTTCATAACATTCGAAGGAAAGCCG
CTGATTCATTAATGAAGGCTGTTCACCAGGAATTAAAGGGCTTATACTTAGAAAAAGCGTCTTTCTCTATATCTTTTGAC
CATAAACAACATGAACGATTGATACAAAATAATGATTATACATCCATAGATCTGCATAAAAATGGGTTTGATCATGTCCG
CTTTTTGATATCTACAAATACAGGCGAGCCTTTAAAATCATTAAATAAAGTAGCTTCCGGTGGTGAGCTTTCACGAATTA
TGCTTGTTCTTAAAAAAATATTTGCAAAACATCAGGGTGTAACAAGTGTTATATTTGATGAAGTGGATACTGGGGTAAGT
GGACGTGTAGCACAAGCAATAGCCGAAAAAATATTTCAGATATCCAGTGAATCACAAGTTTTATGTATAACACATTTACC
ACAGGTAGCAGCAATGGCTGATGTTCATAAATTAATTGAGAAGCAAGAGATAGAAAATCGAACAGCAACGCTCGTTTGGG
AATTAACAGCAGAAGAGAAAATAGAAGAATTAAGCAGAATGATGACCGGAACGAAATTAACAGAAACAGCAAAAGAACAT
GGCAAAGAACTACTTGATTTGGCATCTGCATTTAAAAATAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.076

100

0.523