Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MA853_RS03385 Genome accession   NZ_CP092026
Coordinates   659965..661938 (-) Length   657 a.a.
NCBI ID   WP_002810956.1    Uniprot ID   -
Organism   Campylobacter coli strain 14240-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 654965..666938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS03360 (MA853_03360) - 655698..655943 (+) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -
  MA853_RS03365 (MA853_03365) tsaE 655940..656347 (+) 408 WP_002776418.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  MA853_RS03370 (MA853_03370) lptB 656340..657068 (+) 729 WP_002781615.1 LPS export ABC transporter ATP-binding protein -
  MA853_RS03375 (MA853_03375) - 657068..658318 (+) 1251 WP_002781614.1 RNA polymerase factor sigma-54 -
  MA853_RS03380 (MA853_03380) - 658506..659930 (+) 1425 WP_002810958.1 anaerobic C4-dicarboxylate transporter -
  MA853_RS03385 (MA853_03385) uvrB 659965..661938 (-) 1974 WP_002810956.1 excinuclease ABC subunit UvrB Machinery gene
  MA853_RS03390 (MA853_03390) - 662093..662323 (+) 231 WP_002776426.1 hypothetical protein -
  MA853_RS03395 (MA853_03395) - 662313..662558 (+) 246 WP_002776428.1 hypothetical protein -
  MA853_RS03400 (MA853_03400) Cj0683 662555..663001 (+) 447 WP_002785938.1 type II secretion system protein Machinery gene
  MA853_RS03405 (MA853_03405) - 662998..664836 (+) 1839 WP_002785939.1 primosomal protein N' -
  MA853_RS03410 (MA853_03410) - 664820..665590 (-) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  MA853_RS03415 (MA853_03415) - 665587..666195 (-) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75893.30 Da        Isoelectric Point: 6.7847

>NTDB_id=564366 MA853_RS03385 WP_002810956.1 659965..661938(-) (uvrB) [Campylobacter coli strain 14240-1]
MLELTSDFKPSPDQKQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSN
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDTIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKIELNERLAQFEHENKLVEHQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKIEKMPANERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=564366 MA853_RS03385 WP_002810956.1 659965..661938(-) (uvrB) [Campylobacter coli strain 14240-1]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAAAACAAGCAATACAAGGCATAGTAAAAAGTATAAAAAA
AGGTAATAAATATCAAACCCTGCTTGGCGTAACAGGAAGTGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACTCTTATCATGAGCCACAATAAAAGCCTTTGCGCACAACTTTACAGCGAATTTAAAGGATTTTTTTCTAAT
AATCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGACAGTTCTACAAATGAAGATCTAGAGCGCTTAAGACTTAGCGCAACCGCTTCACTTTTAAGCTATGAAGATGTAG
TTTGCATCGCTAGTGTTTCAGCTAATTATGGACTTGGAAATCCAAATGAATACATTGGAATGGTGTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTGAAAAAACTTGTAGATATGGGCTACAAAAGAAATGATAATTTCTTTGATCG
TGCAGATTTTCGCGTACAAGGTGATACTATAGATATTTATCCTGCTTATTATGAAGATGAAGTAGTAAGGCTTGAATTTT
TCGGCGATGAACTGGATGCAATGTATCATTATAATGTTTTAGAAAACAAAAAAGGCAAAGATTTAAAACGCTTTATACTT
TATCCTACAAGCCAATTTAGTGTAGGAGAAACTAGACTAAAGCAAGCCATTAAAGACATAAAGATAGAACTTAATGAGCG
TTTGGCGCAATTTGAACATGAAAACAAGCTTGTAGAACATCAACGCCTTAAACAACGCGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGGATGTGCAAAGGGGTTGAAAACTATGCTAGACATTTAACAGGATTAAAAGAAGGAGATACACCTTAT
ACACTTTTTGATTATTTTGCTATAAAAAATAGAAAATTCCTTGTTATTGTGGATGAAAGCCATGTTTCTTTACCACAATT
TCGCGGTATGTTTGCAGGGGATAGAAGCAGGAAGCAAACTTTAGTGGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ACCGCCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACTCCCGCCCCACTTGAA
CTTGAACTTAGCAAAGAAAATATCTTTCATCAAATCATGCGCCCAACGGGACTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAGGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTGGTTACTGTAC
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATTAAAGTAAAATACATGCATTCAGATATC
GATGCAATAGAGCGCAATGAAATCATAAGAGGCTTAAGAAGTGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAAATTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.457

99.848

0.504
  uvrB Streptococcus pneumoniae TIGR4

50.457

99.848

0.504
  uvrB Streptococcus pneumoniae D39

50.457

99.848

0.504