Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KFZ58_RS07140 Genome accession   NZ_CP074373
Coordinates   1363383..1365194 (+) Length   603 a.a.
NCBI ID   WP_235794107.1    Uniprot ID   -
Organism   Virgibacillus sp. NKC19-16     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358383..1370194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ58_RS07120 (KFZ58_07110) - 1359324..1359665 (-) 342 WP_235794103.1 P-II family nitrogen regulator -
  KFZ58_RS07125 (KFZ58_07115) spxA 1360064..1360459 (+) 396 WP_235794104.1 transcriptional regulator SpxA -
  KFZ58_RS07130 (KFZ58_07120) mecA 1360800..1361483 (+) 684 WP_235794105.1 adaptor protein MecA -
  KFZ58_RS07135 (KFZ58_07125) - 1362090..1363280 (+) 1191 WP_235794106.1 competence protein CoiA -
  KFZ58_RS07140 (KFZ58_07130) pepF 1363383..1365194 (+) 1812 WP_235794107.1 oligoendopeptidase F Regulator
  KFZ58_RS07145 (KFZ58_07135) - 1365260..1365472 (-) 213 WP_235794108.1 hypothetical protein -
  KFZ58_RS07150 (KFZ58_07140) - 1365836..1366729 (-) 894 WP_304956823.1 ClpXP adapter SpxH family protein -
  KFZ58_RS07155 (KFZ58_07145) - 1366747..1367130 (-) 384 WP_235794109.1 globin -
  KFZ58_RS07160 (KFZ58_07150) - 1367209..1367778 (-) 570 WP_235794110.1 CYTH domain-containing protein -
  KFZ58_RS07165 (KFZ58_07155) - 1368371..1368979 (+) 609 WP_304956830.1 GTP pyrophosphokinase family protein -
  KFZ58_RS07170 (KFZ58_07160) - 1369013..1369822 (+) 810 WP_235794112.1 NAD kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69454.82 Da        Isoelectric Point: 4.4733

>NTDB_id=564366 KFZ58_RS07140 WP_235794107.1 1363383..1365194(+) (pepF) [Virgibacillus sp. NKC19-16]
MAKTSKELPKRSELPEESTWDLEAIFATDEKWEEELKKLKADIPEIEKYQGKLSESAQNLYGLFQLQDELSMRLGKLFTY
AHMRYDQDTTNSFYQALNAKAENVLTLASSSMSFIVPEILEMDEATIKGFLEEKQELQAYQKTLDEINRQRPHILSQREE
ALLAEASEPLSNAAQTFSMLNNADLSFPSITNDDGEEVDLTQGRYIGFLESENRDVRKEAFKAMYDTYGEFINTFASTLS
GNLKTNNFNAKIRNYASAREAALDDNHIPEQVYDNLVEAVNEKLPLLHRYVALRKKVLELDDVHMYDMYTPLVKDVDMKI
PYEKAQQYVLEGLAPLGDEYVDIVKEGYENRWIDVEENKGKRSGAYSSGTYGTNPYILLNWQDSLNDTFTLAHELGHSVH
SYYSRKTQDFRYGNYSIFVAEVASTTNEALLNDYLLKNLDDEKQKLYLLNHYLEGFRGTVFRQTMFAEFEHDIHKRLQDG
QALTAEKLTEIYYDLNKKYFGDDVVSDEEIGLEWARIPHFYMNYYVYQYATGYSAATSLANQILSGKDGAVDRYINFLKA
GSSEYPIEILKKAGVDMTSKQPILDAMDVFEEKLNELEILLLK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=564366 KFZ58_RS07140 WP_235794107.1 1363383..1365194(+) (pepF) [Virgibacillus sp. NKC19-16]
TTGGCTAAAACGTCAAAGGAATTACCAAAACGCAGTGAATTACCTGAAGAATCCACATGGGACTTAGAGGCTATTTTTGC
AACAGATGAAAAGTGGGAAGAAGAGTTAAAGAAACTGAAGGCGGATATTCCGGAAATTGAGAAATATCAAGGAAAGCTTT
CTGAATCAGCTCAGAACTTGTACGGGCTGTTTCAGCTGCAGGATGAGCTTTCAATGCGGCTTGGGAAGCTGTTTACATAT
GCGCATATGCGTTATGATCAGGATACAACAAATTCATTTTACCAAGCACTTAACGCAAAAGCTGAGAATGTGCTGACACT
AGCTTCCAGTTCGATGAGCTTTATTGTACCGGAAATACTTGAGATGGATGAGGCGACAATAAAAGGTTTTCTTGAAGAAA
AGCAGGAATTACAAGCATACCAAAAGACGTTGGATGAAATTAATCGTCAGCGCCCCCATATATTAAGCCAGCGTGAAGAG
GCATTACTGGCAGAAGCATCCGAGCCGTTGTCAAACGCGGCGCAAACGTTCAGCATGCTCAATAATGCTGATCTAAGCTT
CCCATCCATTACAAATGATGATGGGGAAGAGGTCGACTTGACGCAGGGGAGATATATTGGATTTCTGGAATCAGAAAATC
GTGATGTTCGTAAGGAAGCTTTTAAGGCAATGTATGATACGTATGGAGAATTTATCAATACATTTGCCTCCACCCTAAGT
GGTAATTTGAAGACGAATAATTTTAATGCTAAAATCCGTAATTATGCATCAGCTAGAGAAGCAGCACTTGATGATAATCA
TATCCCAGAACAAGTGTATGATAATCTGGTTGAGGCTGTTAATGAAAAATTACCATTGCTTCACCGCTACGTGGCATTGC
GGAAAAAGGTGTTAGAGTTGGATGACGTGCATATGTATGACATGTATACACCACTTGTCAAGGATGTCGATATGAAAATA
CCTTATGAAAAAGCACAGCAATATGTGCTGGAAGGTTTAGCCCCCCTTGGAGATGAATATGTGGACATTGTAAAAGAGGG
CTATGAAAATCGCTGGATTGATGTTGAAGAGAATAAAGGGAAGCGCAGTGGTGCCTATTCATCAGGAACATACGGGACAA
ATCCATACATTCTGTTGAACTGGCAGGACAGTTTGAATGACACGTTTACCCTAGCACATGAGCTCGGACATTCTGTGCAT
AGCTATTATTCGAGAAAAACGCAGGACTTCCGTTATGGAAATTACTCGATTTTTGTAGCAGAGGTGGCGTCAACAACTAA
TGAGGCTTTGTTAAATGACTATCTGTTAAAGAATCTTGATGATGAGAAACAGAAGCTCTATTTGCTCAATCATTATCTAG
AGGGCTTTCGTGGTACCGTATTCCGTCAAACCATGTTTGCTGAATTTGAGCATGATATTCATAAACGCTTGCAGGACGGG
CAAGCGCTAACTGCGGAAAAACTAACGGAAATTTACTACGACTTAAATAAAAAATACTTCGGTGATGATGTTGTCTCAGA
TGAAGAAATTGGCTTGGAATGGGCAAGAATCCCACATTTTTATATGAATTATTATGTGTATCAATATGCAACAGGGTATT
CGGCTGCAACATCGCTTGCGAATCAAATACTTTCAGGAAAAGATGGTGCAGTAGACCGTTATATTAACTTCTTGAAAGCA
GGAAGTAGTGAATATCCAATTGAAATATTGAAGAAAGCCGGTGTGGATATGACATCTAAACAGCCGATTTTAGATGCCAT
GGATGTCTTTGAGGAAAAGCTAAACGAGTTGGAAATATTACTGCTAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(209-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.342

0.484