Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KFZ58_RS02920 Genome accession   NZ_CP074373
Coordinates   528584..529540 (+) Length   318 a.a.
NCBI ID   WP_235793366.1    Uniprot ID   -
Organism   Virgibacillus sp. NKC19-16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523584..534540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ58_RS02895 (KFZ58_02895) - 523859..524404 (-) 546 WP_235793361.1 HD domain-containing protein -
  KFZ58_RS02900 (KFZ58_02900) fni 524570..525625 (+) 1056 WP_235793362.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  KFZ58_RS02905 (KFZ58_02905) - 525799..526257 (+) 459 WP_235793363.1 DUF2188 domain-containing protein -
  KFZ58_RS02910 (KFZ58_02910) - 526359..527225 (+) 867 WP_235793364.1 MBL fold metallo-hydrolase -
  KFZ58_RS02915 (KFZ58_02915) - 527366..528088 (+) 723 WP_235793365.1 DsbA family protein -
  KFZ58_RS02920 (KFZ58_02920) ceuB 528584..529540 (+) 957 WP_235793366.1 ABC transporter permease Machinery gene
  KFZ58_RS02925 (KFZ58_02925) - 529527..530483 (+) 957 WP_235793367.1 iron chelate uptake ABC transporter family permease subunit -
  KFZ58_RS02930 (KFZ58_02930) - 530480..531250 (+) 771 WP_235793368.1 ABC transporter ATP-binding protein -
  KFZ58_RS02935 (KFZ58_02935) - 531563..532645 (+) 1083 WP_235793369.1 siderophore ABC transporter substrate-binding protein -
  KFZ58_RS02940 (KFZ58_02940) - 532994..533707 (+) 714 WP_235793370.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34772.03 Da        Isoelectric Point: 8.6895

>NTDB_id=564358 KFZ58_RS02920 WP_235793366.1 528584..529540(+) (ceuB) [Virgibacillus sp. NKC19-16]
MKLWILIIVTMILSVISLFLGAIDISLSDLLDLDSDELQVFLISRVPRLLAIIMAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGIMISMLFITNVTYTQQVIFSFAFSLAGTFLFMQILDRIKFKDVIFVPLIGLMYGNILGSITVFFGYEADIL
QNLESWFMGSFTTITAGRYELLYISIPAILLAYIYANKFTIAGMGEDLAKNLGMSYKLVLNLGLILVAVISTSVVLTVGV
IPFLGLIVPNIVSIFMGDNIRKTIPLTMVVGVAFLLICDIIGRIIVHPYEIPVNVTVAVIGSAIFLILLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=564358 KFZ58_RS02920 WP_235793366.1 528584..529540(+) (ceuB) [Virgibacillus sp. NKC19-16]
ATGAAACTATGGATATTAATAATTGTAACTATGATTCTGTCAGTGATATCGCTATTTTTAGGTGCGATAGACATTAGCTT
AAGTGACTTGCTGGATTTAGATTCGGATGAGCTACAAGTCTTTTTAATAAGCAGAGTGCCCCGGTTATTGGCAATTATAA
TGGCAGGCGCAGGAATGAGTATAGCTGGTCTAATTATGCAGAGTTTGAGTCGAAATAAATTTGTATCTCCAACAACAGCT
GGAACATTGGATGCCGCTAAGCTGGGGATTATGATATCTATGTTGTTTATTACAAATGTCACGTACACACAGCAAGTTAT
CTTCAGCTTCGCGTTCTCTTTAGCAGGTACATTCCTTTTCATGCAAATTCTGGACCGCATTAAATTTAAAGATGTTATAT
TTGTTCCATTAATTGGGCTTATGTATGGAAATATTCTAGGCTCTATTACTGTATTTTTCGGTTATGAAGCTGATATTCTC
CAAAATCTTGAATCCTGGTTTATGGGCAGCTTCACAACAATTACTGCTGGTCGTTATGAATTATTATATATAAGTATTCC
AGCTATATTACTCGCTTATATTTATGCAAATAAGTTCACCATTGCTGGTATGGGAGAGGATCTTGCGAAGAACTTAGGGA
TGAGTTATAAGTTAGTCCTTAATTTAGGTCTTATTCTTGTCGCAGTTATTTCTACATCTGTCGTGTTAACTGTCGGTGTT
ATTCCGTTTTTAGGTCTTATTGTGCCTAACATCGTATCTATTTTCATGGGAGATAATATTCGTAAAACAATACCTCTTAC
AATGGTAGTTGGGGTTGCATTTTTATTAATTTGCGACATAATCGGTCGTATCATTGTACATCCGTATGAGATACCAGTAA
ACGTTACAGTGGCAGTAATTGGCAGTGCAATCTTCTTAATTTTGTTATTTAGGGGGAGAGCATATGCAAAGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

99.371

0.5