Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MA853_RS00580 Genome accession   NZ_CP092026
Coordinates   124131..126029 (-) Length   632 a.a.
NCBI ID   WP_002811144.1    Uniprot ID   -
Organism   Campylobacter coli strain 14240-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119131..131029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS00550 (MA853_00550) map 119162..119920 (+) 759 WP_002778854.1 type I methionyl aminopeptidase -
  MA853_RS00555 (MA853_00555) - 120241..120741 (-) 501 WP_002778855.1 flagellar FLiS export co-chaperone -
  MA853_RS00560 (MA853_00560) - 120793..121395 (-) 603 WP_002783050.1 ABC-type transport auxiliary lipoprotein family protein -
  MA853_RS00565 (MA853_00565) - 121392..122288 (-) 897 WP_002781970.1 MlaD family protein -
  MA853_RS00570 (MA853_00570) - 122291..123013 (-) 723 WP_002781968.1 ABC transporter ATP-binding protein -
  MA853_RS00575 (MA853_00575) - 123014..124129 (-) 1116 WP_002781966.1 ABC transporter permease -
  MA853_RS00580 (MA853_00580) recP/tkt 124131..126029 (-) 1899 WP_002811144.1 transketolase Machinery gene
  MA853_RS00585 (MA853_00585) - 126039..126878 (-) 840 WP_002794686.1 polyprenyl synthetase family protein -
  MA853_RS00590 (MA853_00590) - 126875..127966 (-) 1092 WP_002778863.1 PDZ domain-containing protein -
  MA853_RS00595 (MA853_00595) - 127963..128268 (-) 306 WP_002778864.1 YbaB/EbfC family nucleoid-associated protein -
  MA853_RS00600 (MA853_00600) - 128272..129555 (-) 1284 WP_052778123.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  MA853_RS00605 (MA853_00605) - 129539..130096 (-) 558 WP_002781959.1 hypothetical protein -
  MA853_RS00610 (MA853_00610) - 130083..130355 (-) 273 WP_002778869.1 NifU family protein -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69633.30 Da        Isoelectric Point: 5.6144

>NTDB_id=564358 MA853_RS00580 WP_002811144.1 124131..126029(-) (recP/tkt) [Campylobacter coli strain 14240-1]
MDLSILQEQANTLRFLSADMVQKANSGHPGAPLGMADILTVLSYHLSHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLDDIKNFRQLHSKTPGHPEISTQGVEIATGPLGQGIANAVGFAMAAKKAQNLLGKELINHKVYCLCGDGDLQEGIS
YEACSLAGLHKLDNLIIIYDSNEISIEGDVSLAFNEDVKMRFESQGFEVLSIDGHDYEAIDKALKQAKEANKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEKAGFDPNLNFYIPKAAKIRFESAVELGDLEEAKWKDKLEKSEKKELLEKL
LNPDFSKINYPDFKGKDLATRDSNEEILNALAKDLEGFLGGSADLAPSNKTELYGMGDFAEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKVKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKESKDAKFTLLASGSEVSLCLESANELEKQGFACNVISMP
CFELFEKQDKAYKDRLLQGEVIGVEAAHSNELYKFCDRVYGIESFGESGKDKDVFEHFGFSVPQILNFILDK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=564358 MA853_RS00580 WP_002811144.1 124131..126029(-) (recP/tkt) [Campylobacter coli strain 14240-1]
ATGGATCTATCGATATTACAAGAACAAGCAAATACTTTAAGATTTTTAAGTGCCGATATGGTGCAAAAGGCTAATTCAGG
CCACCCAGGTGCACCCTTGGGAATGGCTGATATTTTAACGGTTTTAAGTTATCATCTTTCTCATAATCCTAAAAACCCAA
CTTGGCTAAACCGCGATAGGCTTGTGTTTTCAGGCGGACATGCCAGTGCTTTGCTTTATAGCTTTTTGCATTTAAGTGGT
TATGATTTAAGTTTAGATGATATTAAAAATTTCCGCCAACTTCATTCAAAAACTCCAGGCCATCCTGAAATTTCAACTCA
AGGAGTAGAGATTGCTACGGGCCCATTAGGACAAGGTATAGCTAATGCTGTAGGCTTTGCTATGGCAGCTAAAAAAGCTC
AAAACTTACTAGGAAAAGAATTAATCAATCACAAGGTTTATTGTCTTTGTGGAGATGGGGATTTACAAGAGGGAATTTCT
TATGAAGCGTGTTCTTTAGCAGGACTTCATAAACTTGATAATTTAATCATCATCTATGATAGCAATGAAATTTCTATCGA
AGGAGATGTAAGCTTAGCCTTTAATGAAGATGTAAAAATGCGTTTTGAGTCACAAGGCTTTGAAGTTTTAAGTATCGATG
GACACGATTATGAAGCAATTGATAAGGCTCTAAAACAAGCTAAAGAAGCCAACAAACCTTGCCTTATCATCGCAAAAACA
ACAATAGCAAAAGGCGCAGGAGAGCTTGAAGGAAGTCACAAAAGCCACGGCGCACCTTTGGGTGAAGAGGTTATTAAAAA
AGCCAAAGAAAAAGCAGGATTTGATCCAAATTTAAATTTTTATATACCTAAAGCAGCAAAAATTCGCTTCGAAAGTGCTG
TAGAACTTGGAGATTTAGAAGAAGCTAAATGGAAAGATAAGCTCGAAAAATCAGAAAAAAAAGAACTCTTAGAAAAACTT
TTAAATCCTGATTTTAGCAAGATAAATTATCCTGATTTTAAAGGCAAGGATTTAGCTACAAGAGATAGTAATGAAGAAAT
TTTAAATGCTCTAGCTAAAGATTTGGAAGGATTTTTAGGCGGAAGTGCGGACTTAGCCCCATCTAATAAAACCGAACTTT
ATGGAATGGGTGATTTTGCGGAAGGAAAAAATATTCATTTTGGTATCAGAGAACACGCTATGGCTGCGATCAATAATGCC
TTTGCAAGATATGGAATTTTCTTACCTTTTTCAGCAACATTTTTTATCTTTAGCGAATATTTAAAACCCGCAGCTAGGAT
AGCAGCTTTAATGAAAGTCAAACATTTTTTCATTTTCACACATGATAGCATAGGCGTTGGCGAAGATGGACCAACTCATC
AACCTATCGAACAACTCAGCACTTTTAGAGCTATGCCAAATTTCTTAACCTTTAGACCAGCTGATGGAGTGGAAAATGTT
AAAGCTTGGCAAATAGCTTTAAATGCAGATATTCCAAGTGCTTTTGTACTTTCACGCCAAAAGCTTAAGGCTTTAAATGA
ACCTGTTTTTGGTGATGTAAAAAACGGGGCGTATTTACTTAAAGAAAGTAAAGATGCTAAATTTACGCTTTTAGCAAGCG
GAAGTGAGGTTTCTCTTTGCTTAGAAAGTGCAAATGAATTAGAAAAACAAGGCTTTGCTTGTAATGTAATCTCCATGCCT
TGTTTTGAACTCTTTGAAAAGCAAGATAAAGCTTATAAAGATAGGCTTTTACAGGGTGAAGTTATAGGGGTTGAAGCAGC
ACATTCTAATGAGCTTTATAAATTCTGCGATAGGGTTTATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGATAAAGATG
TATTTGAGCATTTTGGTTTTAGCGTTCCACAAATTTTAAATTTCATTCTCGATAAGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(522-625)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.278

100

0.413