Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MA852_RS06280 Genome accession   NZ_CP092025
Coordinates   1195613..1196479 (-) Length   288 a.a.
NCBI ID   WP_052784968.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190613..1201479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS06255 (MA852_06255) radA/sms 1191093..1192433 (-) 1341 WP_002799208.1 DNA repair protein RadA Machinery gene
  MA852_RS06260 (MA852_06260) - 1192569..1193417 (+) 849 WP_057044614.1 carbon-nitrogen hydrolase family protein -
  MA852_RS06265 (MA852_06265) - 1193420..1194301 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  MA852_RS06270 (MA852_06270) - 1194343..1194678 (+) 336 WP_002777373.1 hypothetical protein -
  MA852_RS06275 (MA852_06275) - 1194671..1195616 (+) 946 Protein_1220 CobW family GTP-binding protein -
  MA852_RS06280 (MA852_06280) pilA 1195613..1196479 (-) 867 WP_052784968.1 signal recognition particle-docking protein FtsY Machinery gene
  MA852_RS06285 (MA852_06285) - 1196479..1197036 (-) 558 WP_057044615.1 TlpA disulfide reductase family protein -
  MA852_RS06290 (MA852_06290) - 1197118..1197744 (+) 627 WP_002825279.1 5-formyltetrahydrofolate cyclo-ligase -
  MA852_RS06295 (MA852_06295) rny 1197665..1199218 (+) 1554 WP_002825278.1 ribonuclease Y -
  MA852_RS06300 (MA852_06300) - 1199229..1199786 (+) 558 WP_002781270.1 DedA family protein -
  MA852_RS06305 (MA852_06305) - 1199786..1201045 (+) 1260 WP_025399104.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31846.88 Da        Isoelectric Point: 5.1228

>NTDB_id=564335 MA852_RS06280 WP_052784968.1 1195613..1196479(-) (pilA) [Campylobacter coli strain 14158-6]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNASILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=564335 MA852_RS06280 WP_052784968.1 1195613..1196479(-) (pilA) [Campylobacter coli strain 14158-6]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
TAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCATATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTATGAAAATAAAGAATTTTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCGGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTGGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGACACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAACT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGTACTCAAG
GCAATGCCAGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCACTTTTTAGTATAGCGCGCGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAGTTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444