Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MA852_RS05980 Genome accession   NZ_CP092025
Coordinates   1137634..1138584 (+) Length   316 a.a.
NCBI ID   WP_002825333.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132634..1143584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS05955 (MA852_05955) neuB 1133132..1134172 (+) 1041 WP_057044594.1 N-acetylneuraminate synthase -
  MA852_RS05960 (MA852_05960) neuC 1134169..1135287 (+) 1119 WP_002878821.1 UDP-N-acetylglucosamine 2-epimerase -
  MA852_RS05965 (MA852_05965) - 1135284..1135949 (+) 666 WP_057044595.1 cytidylyltransferase domain-containing protein -
  MA852_RS05970 (MA852_05970) - 1136073..1136771 (+) 699 WP_228761796.1 CatB-related O-acetyltransferase -
  MA852_RS05975 (MA852_05975) - 1136763..1137575 (-) 813 WP_057044596.1 glycosyltransferase family 2 protein -
  MA852_RS05980 (MA852_05980) waaF 1137634..1138584 (+) 951 WP_002825333.1 lipopolysaccharide heptosyltransferase II Regulator
  MA852_RS05985 (MA852_05985) - 1138570..1139334 (-) 765 WP_057044597.1 glycosyltransferase family 25 protein -
  MA852_RS05990 (MA852_05990) gmhA 1139334..1139894 (-) 561 WP_057044598.1 D-sedoheptulose 7-phosphate isomerase -
  MA852_RS05995 (MA852_05995) rfaE1 1139891..1141276 (-) 1386 WP_057044599.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  MA852_RS06000 (MA852_06000) rfaD 1141269..1142222 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  MA852_RS06005 (MA852_06005) - 1142223..1142783 (-) 561 WP_057044600.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  MA852_RS06010 (MA852_06010) - 1142860..1143159 (+) 300 WP_002777238.1 cytochrome c -
  MA852_RS06015 (MA852_06015) - 1143189..1143389 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36243.74 Da        Isoelectric Point: 10.2421

>NTDB_id=564331 MA852_RS05980 WP_002825333.1 1137634..1138584(+) (waaF) [Campylobacter coli strain 14158-6]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFSNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGTGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKIKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=564331 MA852_RS05980 WP_002825333.1 1137634..1138584(+) (waaF) [Campylobacter coli strain 14158-6]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTTCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCACAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCGGTCTATAAGATAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACCTCACC
TTGGCAAAACGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.675

99.367

0.921