Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MA852_RS03180 Genome accession   NZ_CP092025
Coordinates   608666..609046 (+) Length   126 a.a.
NCBI ID   WP_002792200.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 603666..614046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS03160 (MA852_03160) - 603775..605709 (-) 1935 WP_238505198.1 ribonuclease R family protein -
  MA852_RS03165 (MA852_03165) ilvC 605832..606854 (+) 1023 WP_238505200.1 ketol-acid reductoisomerase -
  MA852_RS03170 (MA852_03170) - 606857..607909 (+) 1053 WP_233907083.1 divergent polysaccharide deacetylase family protein -
  MA852_RS03175 (MA852_03175) dprA 607899..608669 (+) 771 WP_002825342.1 DNA-processing protein DprA Machinery gene
  MA852_RS03180 (MA852_03180) dprB 608666..609046 (+) 381 WP_002792200.1 Holliday junction resolvase RuvX Machinery gene
  MA852_RS03185 (MA852_03185) - 609057..609911 (+) 855 WP_409187139.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MA852_RS03190 (MA852_03190) msrA 610134..610634 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MA852_RS03195 (MA852_03195) ppa 610682..611200 (-) 519 WP_002776378.1 inorganic diphosphatase -
  MA852_RS03200 (MA852_03200) - 611211..611786 (-) 576 WP_002781658.1 adenylate kinase -
  MA852_RS03205 (MA852_03205) aspS 611783..613534 (-) 1752 WP_238505202.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13922.31 Da        Isoelectric Point: 8.9633

>NTDB_id=564319 MA852_RS03180 WP_002792200.1 608666..609046(+) (dprB) [Campylobacter coli strain 14158-6]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRTNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=564319 MA852_RS03180 WP_002792200.1 608666..609046(+) (dprB) [Campylobacter coli strain 14158-6]
ATGAGAGCTTTGGCTTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATCGATAAAATCGCCATTCCTTTAGA
GGGTATAATCAGAACAAATCGCAATCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCCAAAGGAGGTTCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421