Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MA852_RS00565 Genome accession   NZ_CP092025
Coordinates   118208..120106 (-) Length   632 a.a.
NCBI ID   WP_057044748.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 113208..125106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS00535 (MA852_00535) map 113319..114077 (+) 759 WP_058000899.1 type I methionyl aminopeptidase -
  MA852_RS00540 (MA852_00540) - 114318..114818 (-) 501 WP_002892084.1 flagellar FLiS export co-chaperone -
  MA852_RS00545 (MA852_00545) - 114869..115471 (-) 603 WP_052785116.1 ABC-type transport auxiliary lipoprotein family protein -
  MA852_RS00550 (MA852_00550) - 115471..116364 (-) 894 WP_057044747.1 MlaD family protein -
  MA852_RS00555 (MA852_00555) - 116367..117089 (-) 723 WP_002826394.1 ABC transporter ATP-binding protein -
  MA852_RS00560 (MA852_00560) - 117090..118205 (-) 1116 WP_025398634.1 ABC transporter permease -
  MA852_RS00565 (MA852_00565) recP/tkt 118208..120106 (-) 1899 WP_057044748.1 transketolase Machinery gene
  MA852_RS00570 (MA852_00570) - 120116..120961 (-) 846 WP_002826398.1 polyprenyl synthetase family protein -
  MA852_RS00575 (MA852_00575) - 120958..122058 (-) 1101 WP_057044749.1 PDZ domain-containing protein -
  MA852_RS00580 (MA852_00580) - 122055..122366 (-) 312 WP_057044750.1 YbaB/EbfC family nucleoid-associated protein -
  MA852_RS00585 (MA852_00585) - 122370..123653 (-) 1284 WP_057044751.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  MA852_RS00590 (MA852_00590) - 123637..124194 (-) 558 WP_002826403.1 hypothetical protein -
  MA852_RS00595 (MA852_00595) - 124181..124453 (-) 273 WP_002778869.1 NifU family protein -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69623.31 Da        Isoelectric Point: 6.0698

>NTDB_id=564312 MA852_RS00565 WP_057044748.1 118208..120106(-) (recP/tkt) [Campylobacter coli strain 14158-6]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGMADILTVLSYHLSHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGKELINHKVYCLCGDGDLQEGIS
YEACSLAGLHKLDNLIIIYDSNEISIEGDVSLAFNEDVKMRFESQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKESKDAKFTLLASGSEVSLCLESANELEKQGFACNVISMP
CFELFEKQDKAYKDRLLQGEVIGVEAAHSNELYKFCDRVYGIESFGESGKDKDVFEHFGFSTPQILNFILNK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=564312 MA852_RS00565 WP_057044748.1 118208..120106(-) (recP/tkt) [Campylobacter coli strain 14158-6]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTTTAAGATTTTTAAGTGCAGATATGGTGCAAAAGGCTAATTCAGG
TCACCCGGGTGCACCTTTAGGAATGGCTGATATTTTAACGGTTTTAAGTTATCATCTTTCTCATAATCCCAAAAATCCAA
CTTGGCTAAACCGCGATAGGCTTGTGTTTTCAGGCGGACATGCCAGTGCTTTGCTTTATAGCTTTTTGCATTTAAGTGGA
TATGATTTAAGTTTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCAAAAACTCCAGGCCATCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCTAATGCTGTAGGCTTTGCTATGGCAGCTAAAAAAGCTC
AAAACTTACTAGGAAAAGAATTAATCAATCACAAGGTTTATTGTCTTTGTGGAGATGGGGATTTACAAGAAGGAATTTCT
TATGAAGCGTGTTCTTTAGCAGGGCTTCATAAGCTTGATAATTTAATCATCATCTATGATAGCAATGAAATTTCTATCGA
AGGAGATGTAAGCTTAGCTTTTAATGAAGATGTAAAAATGCGTTTTGAGTCGCAAGGTTTTGAAGTTTTAAGTATCAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACCATAGCAAAAGGCGCAGGAGAGCTTGAAGGAAGTCACAAAAGCCACGGCGCACCTTTGGGCGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGTTA
TTAAATCCTGATTTTAACAAAATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCGGACTTAGGCCCTTCGAATAAAACAGAACTTC
ACAGTATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGCATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCAGCTAGGAT
AGCAGCTTTAATGAAAATCAAACATTTTTTCATTTTCACACATGATAGCATAGGCGTTGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTGTGCTTTCACGCCAAAAACTTAAGGCTTTAAATGA
ACCTGTTTTTGGTGATGTAAAAAACGGGGCGTATTTACTTAAAGAAAGTAAAGATGCTAAATTTACGCTTTTAGCAAGCG
GAAGTGAGGTTTCTCTTTGCTTAGAAAGTGCAAATGAATTAGAAAAACAAGGCTTTGCTTGTAATGTAATCTCCATGCCT
TGCTTTGAACTCTTTGAAAAGCAAGATAAAGCTTATAAAGATAGGCTTTTACAGGGTGAAGTTATAGGGGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCGATAGGGTTTATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGATAAAGATG
TATTTGAGCATTTTGGTTTTAGCACTCCACAAATTTTAAATTTCATTCTTAATAAGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, C-terminal domain (Transketolase_C)

(522-625)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

39.969

100

0.41