Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MA851_RS05425 Genome accession   NZ_CP092022
Coordinates   1062825..1063376 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15597A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1057825..1068376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA851_RS05390 (MA851_05390) - 1058016..1058441 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  MA851_RS05395 (MA851_05395) - 1058505..1059124 (+) 620 Protein_1048 NAD(P)H-dependent oxidoreductase -
  MA851_RS05400 (MA851_05400) - 1059124..1059729 (+) 606 WP_002882616.1 NAD(P)H-dependent oxidoreductase -
  MA851_RS05405 (MA851_05405) pgsA 1059854..1060390 (+) 537 WP_057032899.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MA851_RS05410 (MA851_05410) rseP 1060387..1061493 (+) 1107 WP_052793046.1 RIP metalloprotease RseP -
  MA851_RS05415 (MA851_05415) - 1061486..1062352 (+) 867 WP_058000704.1 VirK family antimicrobial peptide resistance protein -
  MA851_RS05420 (MA851_05420) rpsF 1062439..1062816 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  MA851_RS05425 (MA851_05425) ssb 1062825..1063376 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  MA851_RS05430 (MA851_05430) rpsR 1063387..1063647 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MA851_RS05435 (MA851_05435) lon 1063707..1066082 (-) 2376 WP_052779714.1 endopeptidase La -
  MA851_RS05440 (MA851_05440) - 1066099..1066746 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  MA851_RS05445 (MA851_05445) fliW 1066907..1067296 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MA851_RS05450 (MA851_05450) proC 1067296..1068027 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  MA851_RS05455 (MA851_05455) ctsT 1068024..1068326 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=564283 MA851_RS05425 WP_002921394.1 1062825..1063376(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 15597A]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=564283 MA851_RS05425 WP_002921394.1 1062825..1063376(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 15597A]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393