Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   MA848_RS06050 Genome accession   NZ_CP092018
Coordinates   1192085..1193425 (-) Length   446 a.a.
NCBI ID   WP_057035621.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15363C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1187085..1198425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA848_RS06025 (MA848_06025) - 1187546..1188715 (-) 1170 WP_238513142.1 metal-dependent hydrolase -
  MA848_RS06030 (MA848_06030) gpsA 1188725..1189621 (-) 897 WP_079851614.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  MA848_RS06035 (MA848_06035) gatB 1189618..1191036 (-) 1419 WP_069176576.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  MA848_RS06040 (MA848_06040) - 1191154..1191339 (-) 186 WP_052779690.1 hypothetical protein -
  MA848_RS06045 (MA848_06045) atpB 1191336..1192016 (-) 681 WP_052779689.1 F0F1 ATP synthase subunit A -
  MA848_RS06050 (MA848_06050) radA/sms 1192085..1193425 (-) 1341 WP_057035621.1 DNA repair protein RadA Machinery gene
  MA848_RS06055 (MA848_06055) pilA 1193425..1194291 (-) 867 WP_052779688.1 signal recognition particle-docking protein FtsY Machinery gene
  MA848_RS06060 (MA848_06060) - 1194291..1194848 (-) 558 WP_052793734.1 TlpA disulfide reductase family protein -
  MA848_RS06065 (MA848_06065) - 1194931..1195557 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  MA848_RS06070 (MA848_06070) rny 1195478..1197031 (+) 1554 WP_002867373.1 ribonuclease Y -
  MA848_RS06075 (MA848_06075) - 1197040..1197597 (+) 558 WP_032591438.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49064.88 Da        Isoelectric Point: 6.6436

>NTDB_id=564200 MA848_RS06050 WP_057035621.1 1192085..1193425(-) (radA/sms) [Campylobacter jejuni subsp. jejuni strain 15363C]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKILKEIAQASERTSEAVCIEDVELEHFIRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKTQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=564200 MA848_RS06050 WP_057035621.1 1192085..1193425(-) (radA/sms) [Campylobacter jejuni subsp. jejuni strain 15363C]
ATGGCAAAGAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAGATTAAGATTTTGAAAGAAATTGCACAAGCAAGCGAAAGAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTATAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGTGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGTGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTAAGTGGCGAAGAAAGTAAAACCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTGCTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGTATTCTTATCGTTGACTCTATACAAACTCTATATTCGAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAAGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCTACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACAAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.065

96.861

0.446
  radA Streptococcus pneumoniae Rx1

45.392

97.309

0.442
  radA Streptococcus pneumoniae D39

45.392

97.309

0.442
  radA Streptococcus pneumoniae R6

45.392

97.309

0.442
  radA Streptococcus pneumoniae TIGR4

45.392

97.309

0.442
  radA Streptococcus mitis NCTC 12261

45.37

96.861

0.439
  radA Streptococcus mitis SK321

45.37

96.861

0.439