Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFQ11_RS14335 Genome accession   NZ_CP074354
Coordinates   2846870..2847499 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain XJ5.2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841870..2852499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ11_RS14320 (KFQ11_14175) helD 2842112..2844166 (-) 2055 WP_001491169.1 DNA helicase IV -
  KFQ11_RS14325 (KFQ11_14180) yccF 2844289..2844735 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFQ11_RS14330 (KFQ11_14185) yccS 2844745..2846907 (+) 2163 WP_000875050.1 YccS family putative transporter -
  KFQ11_RS14335 (KFQ11_14190) sxy/tfoX 2846870..2847499 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFQ11_RS14340 (KFQ11_14195) sulA 2847718..2848227 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFQ11_RS14345 (KFQ11_14200) ompA 2848584..2849636 (+) 1053 WP_000750419.1 porin OmpA -
  KFQ11_RS14350 (KFQ11_14205) matP 2849712..2850164 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KFQ11_RS14355 (KFQ11_14210) ycbZ 2850350..2852110 (+) 1761 WP_282317679.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=564193 KFQ11_RS14335 WP_000793792.1 2846870..2847499(-) (sxy/tfoX) [Escherichia coli strain XJ5.2]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=564193 KFQ11_RS14335 WP_000793792.1 2846870..2847499(-) (sxy/tfoX) [Escherichia coli strain XJ5.2]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995