Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MA544_RS09090 Genome accession   NZ_CP092017
Coordinates   1748922..1750820 (+) Length   632 a.a.
NCBI ID   WP_057036052.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15065A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1743922..1755820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA544_RS09060 (MA544_09060) - 1744587..1744859 (+) 273 WP_002879890.1 NifU family protein -
  MA544_RS09065 (MA544_09065) - 1744846..1745397 (+) 552 WP_002851410.1 hypothetical protein -
  MA544_RS09070 (MA544_09070) murE 1745381..1746664 (+) 1284 WP_002867548.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  MA544_RS09075 (MA544_09075) - 1746668..1746979 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  MA544_RS09080 (MA544_09080) - 1746976..1748070 (+) 1095 WP_057036051.1 PDZ domain-containing protein -
  MA544_RS09085 (MA544_09085) ispA 1748067..1748912 (+) 846 WP_052786606.1 polyprenyl synthetase family protein -
  MA544_RS09090 (MA544_09090) recP/tkt 1748922..1750820 (+) 1899 WP_057036052.1 transketolase Machinery gene
  MA544_RS09095 (MA544_09095) iamB 1750822..1751931 (+) 1110 WP_002874463.1 ABC transporter permease -
  MA544_RS09100 (MA544_09100) iamA 1751932..1752654 (+) 723 WP_002862283.1 ABC transporter ATP-binding protein -
  MA544_RS09105 (MA544_09105) - 1752657..1753547 (+) 891 WP_057036053.1 MlaD family protein -
  MA544_RS09110 (MA544_09110) - 1753547..1754146 (+) 600 WP_052795476.1 ABC-type transport auxiliary lipoprotein family protein -
  MA544_RS09115 (MA544_09115) - 1754202..1754702 (+) 501 WP_002868879.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69596.51 Da        Isoelectric Point: 6.5446

>NTDB_id=564172 MA544_RS09090 WP_057036052.1 1748922..1750820(+) (recP/tkt) [Campylobacter jejuni subsp. jejuni strain 15065A]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGNFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPIFGDVKNGAYLLKESKKAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFECFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=564172 MA544_RS09090 WP_057036052.1 1748922..1750820(+) (recP/tkt) [Campylobacter jejuni subsp. jejuni strain 15065A]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCCGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCCA
CTTGGCTAAACCGTGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGTGGC
TATGATTTAAGCTTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCAGGACACCCTGAAATTTCAACCCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTCATTTATGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGCGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGTAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGTTA
TTAAATCCTGATTTTAACAAAATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCGGACTTAGGCCCTTCGAATAAAACAGAACTTC
ACAGTATGGGAAACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTGTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTATTTTTGGAGATGTAAAAAACGGAGCGTATTTACTCAAAGAAAGCAAAAAGGCTAAATTTACACTTCTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTCTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCCATAAAGTATATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGACAAAGATG
TGTTTGAATGCTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(521-571)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.678

100

0.418