Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BAM5036_RS17220 Genome accession   NC_020410
Coordinates   3560488..3561633 (+) Length   381 a.a.
NCBI ID   WP_015418439.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3555488..3566633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS17200 (BAM5036_3379) - 3556385..3556813 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  BAM5036_RS17205 (BAM5036_3380) - 3556967..3557479 (+) 513 Protein_3397 bacteriocin biosynthesis protein AlbG -
  BAM5036_RS17210 (BAM5036_3381) - 3557486..3558862 (-) 1377 WP_015418437.1 YncE family protein -
  BAM5036_RS17215 (BAM5036_3382) - 3558902..3560257 (-) 1356 WP_015418438.1 YncE family protein -
  BAM5036_RS17220 (BAM5036_3383) rapF 3560488..3561633 (+) 1146 WP_015418439.1 tetratricopeptide repeat protein Regulator
  BAM5036_RS17225 phrF 3561617..3561736 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAM5036_RS17230 (BAM5036_3384) - 3561934..3562137 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BAM5036_RS17235 (BAM5036_3385) - 3562151..3562354 (+) 204 WP_015418440.1 hypothetical protein -
  BAM5036_RS17240 (BAM5036_3386) - 3562659..3562940 (+) 282 WP_007407643.1 hypothetical protein -
  BAM5036_RS17245 (BAM5036_3387) - 3562984..3563496 (+) 513 WP_031378560.1 stage II sporulation protein M -
  BAM5036_RS17255 (BAM5036_3389) - 3564087..3564305 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  BAM5036_RS17260 (BAM5036_3390) speB 3564473..3565345 (-) 873 WP_007407646.1 agmatinase -
  BAM5036_RS17265 (BAM5036_3391) speE 3565404..3566234 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45569.65 Da        Isoelectric Point: 4.5769

>NTDB_id=56408 BAM5036_RS17220 WP_015418439.1 3560488..3561633(+) (rapF) [Bacillus velezensis UCMB5036]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=56408 BAM5036_RS17220 WP_015418439.1 3560488..3561633(+) (rapF) [Bacillus velezensis UCMB5036]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTATTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564

Multiple sequence alignment