Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PA8380_RS09685 Genome accession   NZ_AP014839
Coordinates   2066072..2066401 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 8380     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061072..2071401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA8380_RS09670 (PA8380_19770) - 2061363..2062568 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  PA8380_RS09675 (PA8380_19780) - 2062761..2063789 (+) 1029 WP_003116434.1 MraY family glycosyltransferase -
  PA8380_RS09680 (PA8380_19790) - 2063884..2065881 (+) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  PA8380_RS09685 (PA8380_19800) comEA/comE1 2066072..2066401 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PA8380_RS09695 (PA8380_19820) - 2066617..2067813 (-) 1197 WP_017149201.1 amino acid aminotransferase -
  PA8380_RS09700 (PA8380_19830) uvrB 2068001..2070013 (+) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=56399 PA8380_RS09685 WP_003091430.1 2066072..2066401(+) (comEA/comE1) [Pseudomonas aeruginosa strain 8380]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=56399 PA8380_RS09685 WP_003091430.1 2066072..2066401(+) (comEA/comE1) [Pseudomonas aeruginosa strain 8380]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATTGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment