Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QS27_RS13770 Genome accession   NZ_CP074262
Coordinates   2833137..2833742 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828137..2838742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QS27_RS13755 (QS27_13615) helD 2828354..2830408 (-) 2055 WP_039590793.1 DNA helicase IV -
  QS27_RS13760 (QS27_13620) - 2830532..2830978 (+) 447 WP_001261222.1 YccF domain-containing protein -
  QS27_RS13765 (QS27_13625) yccS 2830997..2833150 (+) 2154 WP_000950876.1 YccS family putative transporter -
  QS27_RS13770 (QS27_13630) sxy/tfoX 2833137..2833742 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  QS27_RS13775 (QS27_13635) sulA 2833959..2834468 (+) 510 WP_039590795.1 SOS-induced cell division inhibitor SulA -
  QS27_RS13780 (QS27_13640) ompA 2834825..2835877 (+) 1053 WP_001670727.1 porin OmpA -
  QS27_RS13785 (QS27_13645) matP 2835949..2836401 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  QS27_RS13790 (QS27_13650) - 2836587..2838347 (+) 1761 WP_039590797.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=563980 QS27_RS13770 WP_001202375.1 2833137..2833742(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=563980 QS27_RS13770 WP_001202375.1 2833137..2833742(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Livingstone strain CFSAN024717]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAACTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751