Detailed information NTG0056394

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA8380_RS07010
• Genome accession: NZ_AP014839
• Coordinates: 1489426..1490430 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 8380
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1484426..1495430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA8380_RS06980 (PA8380_14280)	fghA	1484518..1485369 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
PA8380_RS06985 (PA8380_14290)	ispF	1485440..1485913 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA8380_RS06990 (PA8380_14300)	truD	1485910..1486977 (+)	1068	WP_017148389.1	tRNA pseudouridine(13) synthase TruD	-
PA8380_RS06995 (PA8380_14310)	surE	1486965..1487714 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA8380_RS07000 (PA8380_14320)	-	1487747..1488382 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA8380_RS07005 (PA8380_14330)	-	1488428..1489321 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA8380_RS07010 (PA8380_14340)	rpoS	1489426..1490430 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA8380_RS07015 (PA8380_14350)	fdxA	1490857..1491180 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PA8380_RS07020 (PA8380_14360)	mutS	1491247..1493814 (-)	2568	WP_078451731.1	DNA mismatch repair protein MutS	-
PA8380_RS07025 (PA8380_14370)	-	1494151..1495134 (+)	984	WP_124074654.1	ATP-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=56394 PA8380_RS07010 WP_003113871.1 1489426..1490430(+) (rpoS) [Pseudomonas aeruginosa strain 8380]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=56394 PA8380_RS07010 WP_003113871.1 1489426..1490430(+) (rpoS) [Pseudomonas aeruginosa strain 8380]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653