Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAM5036_RS12540 Genome accession   NC_020410
Coordinates   2632393..2633145 (-) Length   250 a.a.
NCBI ID   WP_015417928.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627393..2638145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS12515 (BAM5036_2448) mreC 2627829..2628692 (-) 864 WP_015417925.1 rod shape-determining protein MreC -
  BAM5036_RS12520 (BAM5036_2449) mreB 2628723..2629736 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAM5036_RS12525 (BAM5036_2450) radC 2629828..2630523 (-) 696 WP_007408165.1 RadC family protein -
  BAM5036_RS12530 (BAM5036_2451) - 2630555..2631124 (-) 570 WP_015417926.1 Maf family protein -
  BAM5036_RS12535 (BAM5036_2452) - 2631265..2632266 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  BAM5036_RS12540 (BAM5036_2453) comC 2632393..2633145 (-) 753 WP_015417928.1 prepilin peptidase Machinery gene
  BAM5036_RS12545 (BAM5036_2454) - 2633285..2634577 (-) 1293 WP_015417929.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BAM5036_RS12550 (BAM5036_2455) - 2634636..2637278 (-) 2643 WP_015417930.1 valine--tRNA ligase -
  BAM5036_RS12555 (BAM5036_2456) - 2637731..2637922 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27247.99 Da        Isoelectric Point: 9.4293

>NTDB_id=56391 BAM5036_RS12540 WP_015417928.1 2632393..2633145(-) (comC) [Bacillus velezensis UCMB5036]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=56391 BAM5036_RS12540 WP_015417928.1 2632393..2633145(-) (comC) [Bacillus velezensis UCMB5036]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment