Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JYN33_RS13135 Genome accession   NZ_CP074233
Coordinates   2736944..2737558 (-) Length   204 a.a.
NCBI ID   WP_001202381.1    Uniprot ID   A0A248KB44
Organism   Salmonella bongori CFSAN000510 strain SGSC 3100     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2731944..2742558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYN33_RS13120 (JYN33_13120) helD 2732171..2734225 (-) 2055 WP_000420532.1 DNA helicase IV -
  JYN33_RS13125 (JYN33_13125) - 2734348..2734794 (+) 447 WP_001261225.1 YccF domain-containing protein -
  JYN33_RS13130 (JYN33_13130) yccS 2734813..2736966 (+) 2154 WP_000950885.1 YccS family putative transporter -
  JYN33_RS13135 (JYN33_13135) sxy/tfoX 2736944..2737558 (-) 615 WP_001202381.1 TfoX/Sxy family DNA transformation protein Regulator
  JYN33_RS13140 (JYN33_13140) sulA 2737775..2738284 (+) 510 WP_000288729.1 SOS-induced cell division inhibitor SulA -
  JYN33_RS13145 (JYN33_13145) ompA 2738641..2739690 (+) 1050 WP_015702792.1 porin OmpA -
  JYN33_RS13150 (JYN33_13150) matP 2739761..2740213 (-) 453 WP_000877171.1 macrodomain Ter protein MatP -
  JYN33_RS13155 (JYN33_13155) - 2740399..2742159 (+) 1761 WP_000156464.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23586.31 Da        Isoelectric Point: 9.2752

>NTDB_id=563848 JYN33_RS13135 WP_001202381.1 2736944..2737558(-) (sxy/tfoX) [Salmonella bongori CFSAN000510 strain SGSC 3100]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVSYCVKHPPVWLTFMKCGRPVILN
YYRVDESLWRDQQQLVRLSKFSLEAAMKEKHSRFSQHRLKDLPNMTFHLETLLNESGIKDESMLRVLGAKICWLRLRQNN
PLLTVKILYALEGAIVGVHEAALPTNRRQELADWVHSLTAAQAR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=563848 JYN33_RS13135 WP_001202381.1 2736944..2737558(-) (sxy/tfoX) [Salmonella bongori CFSAN000510 strain SGSC 3100]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCATCTTTGGGGACGATTCAGTATCGATCTTT
ATTCGGCAGCTATAGCCTGACCGTGGAAGATACCGTTTTTGCGATGGTGGCGAATGGCGAGCTCTATCTCCGCGCCTGTG
AACAAAGCGTATCCTATTGTGTGAAGCATCCCCCTGTCTGGCTCACGTTTATGAAATGTGGACGCCCCGTTATACTCAAC
TATTATCGGGTCGATGAAAGCCTCTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTTTTCTCTTGAAGCGGCAAT
GAAAGAAAAACATAGCCGTTTTTCACAGCACAGGCTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAGCATGTTACGCGTACTAGGCGCTAAAATATGCTGGCTGAGGCTGCGACAAAATAAT
CCGTTGCTAACGGTAAAGATCCTGTATGCGTTGGAAGGCGCCATTGTTGGCGTACATGAGGCGGCGCTCCCGACAAATCG
TCGCCAGGAGCTTGCCGACTGGGTGCATTCGCTTACGGCTGCGCAAGCCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248KB44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

74.752

99.02

0.74