Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KGP19_RS17770 Genome accession   NZ_CP074182
Coordinates   3704841..3705464 (-) Length   207 a.a.
NCBI ID   WP_032688494.1    Uniprot ID   A0A2X2DYW5
Organism   Raoultella planticola strain JBIWA001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3699841..3710464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP19_RS17755 (KGP19_17715) helD 3700077..3702131 (-) 2055 WP_064793888.1 DNA helicase IV -
  KGP19_RS17760 (KGP19_17720) - 3702254..3702700 (+) 447 WP_004860167.1 YccF domain-containing protein -
  KGP19_RS17765 (KGP19_17725) yccS 3702718..3704853 (+) 2136 WP_032700361.1 YccS family putative transporter -
  KGP19_RS17770 (KGP19_17730) sxy/tfoX 3704841..3705464 (-) 624 WP_032688494.1 TfoX/Sxy family DNA transformation protein Regulator
  KGP19_RS17775 (KGP19_17735) sulA 3705924..3706433 (+) 510 WP_032688495.1 SOS-induced cell division inhibitor SulA -
  KGP19_RS17780 (KGP19_17740) ompA 3706786..3707856 (+) 1071 WP_032688496.1 porin OmpA -
  KGP19_RS17785 (KGP19_17745) matP 3707962..3708414 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  KGP19_RS17790 (KGP19_17750) - 3708600..3710357 (+) 1758 WP_032688497.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23308.02 Da        Isoelectric Point: 9.7117

>NTDB_id=563800 KGP19_RS17770 WP_032688494.1 3704841..3705464(-) (sxy/tfoX) [Raoultella planticola strain JBIWA001]
MKKMSSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKRLQHASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGSQHKNIDLYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=563800 KGP19_RS17770 WP_032688494.1 3704841..3705464(-) (sxy/tfoX) [Raoultella planticola strain JBIWA001]
ATGAAGAAAATGTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTACAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCCACTCCACTCTTGACGATGCGAAAAAATGGTCGCCCGGTCTTACTGAAA
TATTATCAGGTTGACGAGACCCTCTGGGGTGATAGTAAAACGCTTTTCAATCTGTCGGCGTCCTCATTACAAAGTGCACG
CAATGAAAAGCGTCTACAGCATGCGTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAGCTGCTGTTGA
TTAACGCAGGCGTGAGCGATGAAAAAATGCTCCGTCAGTTTGGTGCGGAGAAAGTCTGGTTGAAATTGCGGGAATCAAAC
AAAGCACTCACGTTGAATGTTCTCTATGCGCTGGAAGGGGCTATTGCCGGAGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCAGCCAGCACAAAAATATCGATCTTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X2DYW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498