Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BAM5036_RS10165 Genome accession   NC_020410
Coordinates   2138491..2139099 (+) Length   202 a.a.
NCBI ID   WP_015417702.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2133491..2144099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS10125 (BAM5036_1965) - 2134544..2135050 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  BAM5036_RS10130 (BAM5036_1966) - 2135189..2135602 (+) 414 WP_015417699.1 Hsp20/alpha crystallin family protein -
  BAM5036_RS10135 (BAM5036_1967) - 2135632..2136066 (-) 435 WP_015417700.1 YppG family protein -
  BAM5036_RS10140 (BAM5036_1968) - 2136253..2136435 (+) 183 WP_003153532.1 YppF family protein -
  BAM5036_RS10145 (BAM5036_1969) - 2136474..2136842 (-) 369 WP_007409492.1 YppE family protein -
  BAM5036_RS10150 (BAM5036_1970) - 2136888..2137133 (-) 246 WP_012117836.1 DUF5446 family protein -
  BAM5036_RS10155 (BAM5036_1971) sspM 2137339..2137443 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  BAM5036_RS10160 (BAM5036_1972) - 2137487..2138449 (-) 963 WP_015417701.1 DUF2515 domain-containing protein -
  BAM5036_RS10165 (BAM5036_1973) recU 2138491..2139099 (+) 609 WP_015417702.1 Holliday junction resolvase RecU Machinery gene
  BAM5036_RS10170 (BAM5036_1974) - 2139138..2141921 (+) 2784 WP_015417703.1 PBP1A family penicillin-binding protein -
  BAM5036_RS10175 (BAM5036_1975) - 2141999..2142490 (-) 492 WP_015417704.1 YpoC family protein -
  BAM5036_RS10180 (BAM5036_1976) nth 2142487..2143146 (-) 660 WP_007612187.1 endonuclease III -
  BAM5036_RS10185 (BAM5036_1977) dnaD 2143165..2143863 (-) 699 WP_015417705.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23675.77 Da        Isoelectric Point: 9.5779

>NTDB_id=56374 BAM5036_RS10165 WP_015417702.1 2138491..2139099(+) (recU) [Bacillus velezensis UCMB5036]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=56374 BAM5036_RS10165 WP_015417702.1 2138491..2139099(+) (recU) [Bacillus velezensis UCMB5036]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAAATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCGCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCTCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment