Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KGP22_RS19860 Genome accession   NZ_CP074159
Coordinates   4174586..4176019 (+) Length   477 a.a.
NCBI ID   WP_111964974.1    Uniprot ID   -
Organism   Enterobacter sp. JBIWA005     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4169586..4181019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP22_RS19830 (KGP22_19730) - 4170153..4171130 (+) 978 WP_039260412.1 calcium/sodium antiporter -
  KGP22_RS19835 (KGP22_19735) kdsD 4171144..4172130 (+) 987 WP_023333606.1 arabinose-5-phosphate isomerase KdsD -
  KGP22_RS19840 (KGP22_19740) kdsC 4172145..4172711 (+) 567 WP_111964972.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  KGP22_RS19845 (KGP22_19745) lptC 4172708..4173283 (+) 576 WP_223580585.1 LPS export ABC transporter periplasmic protein LptC -
  KGP22_RS19850 (KGP22_19750) lptA 4173252..4173806 (+) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  KGP22_RS19855 (KGP22_19755) lptB 4173813..4174538 (+) 726 WP_023309359.1 LPS export ABC transporter ATP-binding protein -
  KGP22_RS19860 (KGP22_19760) rpoN/rpoN1 4174586..4176019 (+) 1434 WP_111964974.1 RNA polymerase factor sigma-54 Machinery gene
  KGP22_RS19865 (KGP22_19765) hpf 4176042..4176329 (+) 288 WP_111964975.1 ribosome hibernation promoting factor -
  KGP22_RS19870 (KGP22_19770) ptsN 4176412..4176903 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KGP22_RS19875 (KGP22_19775) rapZ 4176949..4177803 (+) 855 WP_008501442.1 RNase adapter RapZ -
  KGP22_RS19880 (KGP22_19780) npr 4177800..4178072 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  KGP22_RS19885 (KGP22_19785) mtgA 4178112..4178837 (-) 726 WP_149367568.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KGP22_RS19890 (KGP22_19790) elbB 4178834..4179487 (-) 654 WP_136195211.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54139.91 Da        Isoelectric Point: 4.3332

>NTDB_id=563714 KGP22_RS19860 WP_111964974.1 4174586..4176019(+) (rpoN/rpoN1) [Enterobacter sp. JBIWA005]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARVIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=563714 KGP22_RS19860 WP_111964974.1 4174586..4176019(+) (rpoN/rpoN1) [Enterobacter sp. JBIWA005]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATACAGAAGCGCTCGATACCGCCGACGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACGCCTTCCGGTACGCGTGCTGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTCACTCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTTGACGAT
ATTCTGGAAAGCATGGGCGACGAAGAGATAGAGCTTGAGGAAGTTGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTAGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCGTGATCATCAGCGATCACCTGGATCTGCTGGCGAACCACGATTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGATGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCACTCGATCCACGCCCGGGACAGTCAATCCAGACCAG
CGAGCCTGAGTACGTTATTCCGGACGTGCTGGTCAGAAAACACAATGGCCGCTGGGTCGTTGAGCTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTTGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCTTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGTGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCGCTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482