Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L7H22_RS05760 Genome accession   NZ_CP091839
Coordinates   1160974..1162401 (+) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain SWYHX138.261ft     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155974..1167401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H22_RS05720 (L7H22_05720) yeeW 1156157..1156351 (+) 195 WP_000988599.1 DUF5983 family protein -
  L7H22_RS05725 (L7H22_05725) - 1156385..1156477 (+) 93 Protein_1125 DUF957 domain-containing protein -
  L7H22_RS05730 (L7H22_05730) - 1156766..1156903 (-) 138 Protein_1126 transposase domain-containing protein -
  L7H22_RS05735 (L7H22_05735) - 1156966..1157148 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L7H22_RS05740 (L7H22_05740) tmaR 1157249..1157578 (-) 330 WP_000450409.1 DUF496 family protein -
  L7H22_RS05745 (L7H22_05745) yeeA 1157750..1158808 (-) 1059 WP_001200891.1 FUSC family protein -
  L7H22_RS05750 (L7H22_05750) sbmC 1159007..1159480 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  L7H22_RS05755 (L7H22_05755) dacD 1159599..1160765 (-) 1167 WP_219374312.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L7H22_RS05760 (L7H22_05760) sbcB 1160974..1162401 (+) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  L7H22_RS05765 (L7H22_05765) tsuB 1162444..1162671 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L7H22_RS05770 (L7H22_05770) tsuA 1162685..1163743 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  L7H22_RS05775 (L7H22_05775) plaP 1163922..1165280 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L7H22_RS05780 (L7H22_05780) yoeI 1165270..1165332 (-) 63 WP_010723108.1 membrane protein YoeI -
  L7H22_RS05785 (L7H22_05785) yeeY 1165547..1166476 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L7H22_RS05790 (L7H22_05790) yeeZ 1166522..1167346 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=563701 L7H22_RS05760 WP_000980581.1 1160974..1162401(+) (sbcB) [Escherichia coli strain SWYHX138.261ft]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=563701 L7H22_RS05760 WP_000980581.1 1160974..1162401(+) (sbcB) [Escherichia coli strain SWYHX138.261ft]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579