Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KGP18_RS14615 Genome accession   NZ_CP074154
Coordinates   3001372..3001998 (-) Length   208 a.a.
NCBI ID   WP_223534489.1    Uniprot ID   -
Organism   Enterobacter asburiae strain JBIWA007     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2996372..3006998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGP18_RS14600 (KGP18_14580) helD 2996609..2998663 (-) 2055 WP_223534485.1 DNA helicase IV -
  KGP18_RS14605 (KGP18_14585) - 2998787..2999233 (+) 447 WP_023311032.1 YccF domain-containing protein -
  KGP18_RS14610 (KGP18_14590) yccS 2999253..3001415 (+) 2163 WP_223534486.1 YccS family putative transporter -
  KGP18_RS14615 (KGP18_14595) sxy/tfoX 3001372..3001998 (-) 627 WP_223534489.1 TfoX/Sxy family DNA transformation protein Regulator
  KGP18_RS14620 (KGP18_14600) sulA 3002216..3002725 (+) 510 WP_223537917.1 SOS-induced cell division inhibitor SulA -
  KGP18_RS14625 (KGP18_14605) ompA 3003080..3004135 (+) 1056 WP_115504044.1 porin OmpA -
  KGP18_RS14630 (KGP18_14610) matP 3004201..3004653 (-) 453 WP_032658161.1 macrodomain Ter protein MatP -
  KGP18_RS14635 (KGP18_14615) - 3004840..3006600 (+) 1761 WP_223534490.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23883.43 Da        Isoelectric Point: 9.4586

>NTDB_id=563690 KGP18_RS14615 WP_223534489.1 3001372..3001998(-) (sxy/tfoX) [Enterobacter asburiae strain JBIWA007]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENNSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=563690 KGP18_RS14615 WP_223534489.1 3001372..3001998(-) (sxy/tfoX) [Enterobacter asburiae strain JBIWA007]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCACT
GTTTGGAGGCTATACCCTGGCCGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGCGAGCTTTACCTCCGCGCCTGTG
AAGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTAACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGATGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAACGCTATCAGCGCCATCAACGAAACCGACTTAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCAATGAGGAAACGCTGCGGGCGCTGGGTGCAAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATAACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567